Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01397 ATGGACATGATGGACGATAGGGCTAAAGTCAAGGACGAAGTAGTATATCCTTCTGAGGGAAGCGATTCTGTGAAGTACAAGGGAGTGAGAAAGCGAAAGTGGGGTAAATGGGTTTCAGAGATTAGGGTCCCCCATTGCCGCGACCGCATATGGTTAGGTTCATACGACACAGCTGAGAAAGCAGCCCGGGCATTTGATGCAGCTCTATATTGTCTACGCGGTAGCCATGCTAATTTCAATTTCCCTAGTACTCCTTCTGAGATTGATGTGCCTACTCACCAATCTTTCACTCCAGAAGAAATTCAAGAAATTGCAGCTGCATTTGCTAATGGTCATCAAACCTCGCAACAAGGCATGGAGAATTTGGAGTCGAGTAGGGCAATGCTTGAAGAAAATATTGATTCTACTTTCAACATGGTGTCAGAAGAAAATCATATCCAACCACTGTCCCTTGGTAGTGAGATTATGCCAGAGTTTGATCACAATGAGTTCTCGAATCCTCTACACTTGAACGAAGATGGTAGCAGTCATCAGTCTTTTTTCCTCGGGCTTGAAAAGATGCATTCAGACGACTTATTATTATATCCACAATTGTTGATACCGGGTGAAGATAATGTGGATGATATTCATGGTGGTGATCACGAAGCTTTCTCAACGCCATCTTTCCTTTGGAACTTCTAA 681 0.4317 MDMMDDRAKVKDEVVYPSEGSDSVKYKGVRKRKWGKWVSEIRVPHCRDRIWLGSYDTAEKAARAFDAALYCLRGSHANFNFPSTPSEIDVPTHQSFTPEEIQEIAAAFANGHQTSQQGMENLESSRAMLEENIDSTFNMVSEENHIQPLSLGSEIMPEFDHNEFSNPLHLNEDGSSHQSFFLGLEKMHSDDLLLYPQLLIPGEDNVDDIHGGDHEAFSTPSFLWNF* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01397 226 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Pte17g01397 226 Coils Coil 119 139 - -
Pte17g01397 226 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pte17g01397 226 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pte17g01397 226 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pte17g01397 226 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Pte17g01397 226 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pte17g01397 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 147 - -
Pte17g01397 226 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Pte17g01397 226 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pte17g01397 226 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01397 Pte-Chr17 28615846 28616967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01397 25 120 AP2-EREBP Transcription Factor Family AT1G74930 70.833 4.54e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte17g01397 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01397 - - qsu:111984657 169.859