Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01394 ATGTATTCACCGAAGCAGCTCCGAATGCATAATCCACTGAAACGGAGTTTTGACGACATGGGCGCTGCGGCTGCTGATGCTTCTTTTGAACATGCTCCTAAAAAATCAGCACATTCCACTAGTCCCGACGACTTCACTCCCAGAAGTTATCAATTGAAGGTATTTGAAGTTGCAATGAGAAGAAACACGATAGCTGTCTTGGAGACTGGTGCAGGAAAGACTATGATAGCTGTAATGCTGATGAAAGCTGTTGCTCAAGCTGCGAAGTCTACTGACCATAGAAAGAAGATTATTTTCCTGGCTCCAACTGTTCATCTTCAATGCAAGGTCGTAAGAAGTTATACAAAATTTGAAGTGGGCGAGTACTTTGGGGCCAAGGGGGTTGAGGCATGGAATTCAAAGAACTGGGAGAAGGAAATCAAGGAGCATGATGTACTAGTTATGACACCCCAGATTCTTTTGGATGCACTGAGAAAGGCATTCTTTAGATTAGATACTGTGTGCTTGATGATTATTGATGAATGTCATCGAGCAACCGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAATCTATAGAAAAACCGAAGGTTTTTGGGATGACAGCATCACCAGTACTTAAGAAAGGCGTTTCCTCTGCAGAAGATTGTGAGGGTCAAATGTCAGAACTTGAAAGCACACTGGAGTCTCAGATCTACACCATTGCAAATAAAATGGAGATGGGTATGCATATACCCTCTGCACAGGAAATCTGTCGGTTTTACGATGCAGCCAGGTTTCCTGCGATGAATTTGAAACAAAAAATTGAAGCTTTGGTGCCCAAGTTTGATTCCTTGCTGCTGGAGTTGCATCAAAGTAAATACAAGGATACAGATGACAAGTTGAGGGCCCTCCATAAGCGGATATCCAAAGACCAAATGAAAATTTTGTATTGTCTTGAAGACCTTGGACTCTTCTGTGCTCATGAGGCTATTAAAATCTGTCTACAAAAAGCCCCTCAACTTGAAGAAGGTTGCTATGTTTACAAGAACAGTTACTCTCAGTACAAAATCTTTCTTGAAGAATTAATGCATATGGTTGAGGAATCTATTTCTTTTGCTGATAGGGATCTTTTGGATATCGGGTTTGACCTTTCGGAGGCAGCGCAATCAGGCTACATGTCACCAAAATTAATCGAACTTCTTCAACTTCTATTATCATTGGGAGGAACCAGCAACATGGTGTGCTTGGTTTTTGTTGAAAGGAAACTAACAGCTAAAGTTGTTGAGAGATTAGTTAAAAAGGTTTTTCAATTATCACATTTCACAGTTTCTTATCTAACTGGCAATGGTGCATCCTTTGATGCACTGGCACCTAAGAGGCAGAAGGAGAACTTAGAGTCATTTCGATCTGGAAAGGTCAACATATTGTTTACAACTGACATAGTTGAGGAAGGCATCCATGTGCCAGACTGCTCCTGTGTGATACGATTTGACCTACCTAAGACAGTTAGAAGTTATATCCAATCTCGAGGACGAGCTCGGCAGACAAACTCTGAGTTCGTTGTGATGCTGGAGAGGGGAAACTTGAAACAAAGGGATTTCTTGTTTAACCTCATGAGGAGTGAGTATTCTATGGATGTTGCTGCATTAAAAAGGGATCATCATGCTTGCATCTCAAAGCCATGTTCTGTTGATGAAACAAAAACGTATGTTGTAGATTCTACTGGAGCTTCAGTCACTATTGACTCTAGTGTGAGTCTCATAAGCAGATACTGCGACAAACTTCCTCGTGAAAAGCATTCCTCTTCAAAGCCCATCTTCCAGTTCTTATATAATGGAACATCATATGAGTGCAAATTGACATTACCTGCTAATGCCGTGTTCCGTACAATAGTTGGTCCCTTGAGCAGAAAATCTCAACTTGCAAAGCAGCTTGTGTGCTTTGAAGCATGCAAAAAGCTACATCAATTGGGTGCTTTAGATGATCGTCTCCTCCCATTCACTGAAGAGCCTCTGGAAAATAAATCTAGTGTCAAAAGCAAAGAATCAACATCAGAAGCAGGAAGTACAAAACGGAAGGAATTACATGGCACTATCTGCATCCGTGCCTTGTGTGGGACCTGGGGAGATAAATCGAATGGGTCCAATTTGCATGCCTATCAATTTGATTTCTCTAGTTCCATCGAAAAAGATCAGTTTTCTAGTTTTGTTCTACTAATTGAAGCAGAGCTTGATGATGATGTGGGAAACTTTGAGTTGGAGCTATTCAGTATCTCTAAGGTTGTGAAAGTTAAAGTCTCTTCACGTGGGCAGGTCCATCTTGATGCTGAAGAGATGACAAAAGCTAAATGCTTCCAAGAACTTATTTTCAATGGTTTGTTTGGGAAATTGTTTACTGGATCCAAATCAACTGAAACCCCCCGAGAGTTCTTACTTCAGAAAGAAATGACTCCACTCTGGAGTTCCACGAACATGTATCTTCTTTTACCATTGGAGACAGTAAATCGTTCGAGTCACGGATCTCTGAGTTTGAACTGGAAAGTTATCGATTCTTGTTGTGCTACTGTTCAATTTGTAAAGAAAAACTCTTGGTTGGGGAACACTGATTGTGTGGACACAACGAAGTCGTCATCTTGCAGTTCTTCTCTACTAGAGATTGAAAGTGAACACACTGATAAAATTCACTTTGCCAACTGTGTGGTCAATATGAAAAATCTGAAAGATATGGTAGTTTTGGCCATTCACACGGGAAGACTTTACTCTATCGTTGAGGTCGTTGATAACACCTCTGCTGAAAGTCCCTTTGATGGAAATACAGATAAAGGCTGCCCTCATAGAACATTCAATGAATACTTCAACCAAAAGTACGGAATTGTGCTCAGACATCCAGGCCAACCCTTGTTACGGTTGAAGCAAAGTCATAATCCTCACAACCTTCTTGTGAACTTCTTTGATGAAGGACCTCAGGGTAAGGGATCAAAAGGAGCTTCATGCGCTCGAAAGCCACAAATGCATGTTCATATCCCACCAGAGCTTCTTGTTAATGTCGATATCAGAAGAGATATTTTGAAGACAATGTATGTACTTCCATCACTGATGCACCGAATGGAATCTCTGATGTTATCCAGCCAACTTGGAGGAGAGATTGGCAGACCAAACAGCAACTCCTATATCCCTAGCTCACTGATACTGGAAGCACTTACGACACTAAGATGTTGTGAAAACTTTTCAATGGAACGCTTGGAATTGCTTGGAGATTCAGTTTTGAAGTATGCTGTGGGCTGCCACCTTTTTCTCAAACATCCTAAGACACATGAAGGCCAATTGAGTTACCAACGGTCACGAGCTGTCTGTAACTCAACCCTGCATAAGTTGGGAACAGATTCCAAAATACAGGGATATATTCGTGACTCACCATTTGATCCTCGACGTTGGGTTGCTCCAGGGCAGCGATCTTTACATCCTTCTCCATGTAAATGTGGGTTGGACTCTATGGAAGTTCCTTTGAATGAAAAGTTTCAAACTGAAGATACTAAAACTATAGTGGGCAAGTGCTGTGACAAGGGCCACAGATGGATAATATCAAAGACCATAGCTGATTGTGTTGAAGCTCTGGTAGGAGCATATTTTGTTGCGGGTGGTCTAGTGTCTGCGCTCCATGTGATGAAGTGGTTACACATTGAAGCTGAACTAGATCCATTATTAGTTGCTGAGGCTATTACTACGGCCTCTCTTCATTCATATATGCCTCAAGGTAATGATATTGCAGCCGTTGAGGAAAAGATCGGATATGAGTTTTCTGTCAAGGGTCTCTTACTAGAAGCCATGACACATTCGTCAGACCAAGAATCAGTTGGCTACTCTTATGAAAGGCTTGAATTTCTGGGAGACGCGGTGCTAGACTTGTTAATAACAAGGCATCTCTATCAGAACCATACAGACACTGATCCGGGAGAGTTAACTGACTTGCGATGTGCTTCTGTCAATAATGAAAATTTTGCTCAAGCTGTTGTCAGACGGGGCCTTCAACAGCATCTTCGGCATAATTCTGGAATTCTGCTAAGCCAAATAACGGAATATGTGAAGTCCATATCTGAATCAAACATGCCATCTCGATCATCCCAAGGCATCAGAGTTCCCAAGGCTCTTGGCGATATATTAGAAAGTATAGCTGGGGCTATGCTAATTGATACCAGGCTTAATATTGATCAAGTGTGGAGGATATTCAAACCCTTATTATCACCCATTGTTACACCCGAGAGTCTCGAACTGCCTCCTGTGCGTCAATTGATTGAATTAAGCGACTCTCTTGGGTATTTTATAAAAGAAAGATGTTCAAAGAAGCGGGAAACAGTGCATGTGCAGCTCAGTTTGCAGCTAAAAGACGCTTTATTGGTCGGACAAGCCAATGATCGGAGCAGGAAAAAGGCAAAAGGAGATGCCTCTTTGAAAATACTATCGCAACTTGAGAAAAGAGGGATTACGCACTCAGGTTGTGTGTCCAAGAGGAAGAGAGATAATCCCGATAAAGCCAATGATTCATTTTTGGGGGGAACTAATTCTTGCATCTCTTCTGAAGAACTTGATGGACAGACCCCCAAGCGGATAAATGTTGAAAAGGAGATGACTGAAATTCCCTTGCCTGCAGGCTCTGGACTTGGACTTCCTCCACCAGAAAGTTGTTCGACGGAATTTTATGATCAAAGCACTGTGACCCCAGTTATCACATCCATCAACATGAAGAAAGGAGGACCTCGTACCTCTCTTTTTGAACTCTGCAAGAAAATGCAATGGCCGATGCCAACTTTCGAAACAACAGAACATAAATCCAGAATACCAATCGAATTTAAAGAAGGCTGTGAGACTAAAAAGGCGTTCAACAGTTTCGTTTCAAACATAACTTTGTGCATACCCAGCTTTGGGAATATAGAATGCAAAGGCGATGCTAGAGCTGATAAGAAGAGTTCATTTGACTCAGCTGCACTAGTCATGCTCCATGAACTTGGTCGAATGGGAAGAATAGAGGTTTCTAACGCCTAG 5031 0.4174 MYSPKQLRMHNPLKRSFDDMGAAAADASFEHAPKKSAHSTSPDDFTPRSYQLKVFEVAMRRNTIAVLETGAGKTMIAVMLMKAVAQAAKSTDHRKKIIFLAPTVHLQCKVVRSYTKFEVGEYFGAKGVEAWNSKNWEKEIKEHDVLVMTPQILLDALRKAFFRLDTVCLMIIDECHRATGNHPYAKVMKEFYHKSIEKPKVFGMTASPVLKKGVSSAEDCEGQMSELESTLESQIYTIANKMEMGMHIPSAQEICRFYDAARFPAMNLKQKIEALVPKFDSLLLELHQSKYKDTDDKLRALHKRISKDQMKILYCLEDLGLFCAHEAIKICLQKAPQLEEGCYVYKNSYSQYKIFLEELMHMVEESISFADRDLLDIGFDLSEAAQSGYMSPKLIELLQLLLSLGGTSNMVCLVFVERKLTAKVVERLVKKVFQLSHFTVSYLTGNGASFDALAPKRQKENLESFRSGKVNILFTTDIVEEGIHVPDCSCVIRFDLPKTVRSYIQSRGRARQTNSEFVVMLERGNLKQRDFLFNLMRSEYSMDVAALKRDHHACISKPCSVDETKTYVVDSTGASVTIDSSVSLISRYCDKLPREKHSSSKPIFQFLYNGTSYECKLTLPANAVFRTIVGPLSRKSQLAKQLVCFEACKKLHQLGALDDRLLPFTEEPLENKSSVKSKESTSEAGSTKRKELHGTICIRALCGTWGDKSNGSNLHAYQFDFSSSIEKDQFSSFVLLIEAELDDDVGNFELELFSISKVVKVKVSSRGQVHLDAEEMTKAKCFQELIFNGLFGKLFTGSKSTETPREFLLQKEMTPLWSSTNMYLLLPLETVNRSSHGSLSLNWKVIDSCCATVQFVKKNSWLGNTDCVDTTKSSSCSSSLLEIESEHTDKIHFANCVVNMKNLKDMVVLAIHTGRLYSIVEVVDNTSAESPFDGNTDKGCPHRTFNEYFNQKYGIVLRHPGQPLLRLKQSHNPHNLLVNFFDEGPQGKGSKGASCARKPQMHVHIPPELLVNVDIRRDILKTMYVLPSLMHRMESLMLSSQLGGEIGRPNSNSYIPSSLILEALTTLRCCENFSMERLELLGDSVLKYAVGCHLFLKHPKTHEGQLSYQRSRAVCNSTLHKLGTDSKIQGYIRDSPFDPRRWVAPGQRSLHPSPCKCGLDSMEVPLNEKFQTEDTKTIVGKCCDKGHRWIISKTIADCVEALVGAYFVAGGLVSALHVMKWLHIEAELDPLLVAEAITTASLHSYMPQGNDIAAVEEKIGYEFSVKGLLLEAMTHSSDQESVGYSYERLEFLGDAVLDLLITRHLYQNHTDTDPGELTDLRCASVNNENFAQAVVRRGLQQHLRHNSGILLSQITEYVKSISESNMPSRSSQGIRVPKALGDILESIAGAMLIDTRLNIDQVWRIFKPLLSPIVTPESLELPPVRQLIELSDSLGYFIKERCSKKRETVHVQLSLQLKDALLVGQANDRSRKKAKGDASLKILSQLEKRGITHSGCVSKRKRDNPDKANDSFLGGTNSCISSEELDGQTPKRINVEKEMTEIPLPAGSGLGLPPPESCSTEFYDQSTVTPVITSINMKKGGPRTSLFELCKKMQWPMPTFETTEHKSRIPIEFKEGCETKKAFNSFVSNITLCIPSFGNIECKGDARADKKSSFDSAALVMLHELGRMGRIEVSNA* 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01394 1676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 526 IPR027417 -
Pte17g01394 1676 ProSiteProfiles Ribonuclease III family domain profile. 1252 1396 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 SMART ultradead3 43 236 IPR014001 -
Pte17g01394 1676 SUPERFAMILY PAZ domain 898 1010 IPR036085 GO:0005515
Pte17g01394 1676 SMART riboneu5 1058 1231 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 SMART riboneu5 1267 1419 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 Pfam Type III restriction enzyme, res subunit 59 208 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pte17g01394 1676 ProSiteProfiles Ribonuclease III family domain profile. 1039 1211 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 Gene3D paz domain 886 1011 - -
Pte17g01394 1676 FunFam Endoribonuclease dicer-like protein 42 278 - -
Pte17g01394 1676 Gene3D - 42 277 IPR027417 -
Pte17g01394 1676 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 581 671 IPR005034 GO:0016891
Pte17g01394 1676 MobiDBLite consensus disorder prediction 1510 1528 - -
Pte17g01394 1676 MobiDBLite consensus disorder prediction 1496 1530 - -
Pte17g01394 1676 CDD RIBOc 1058 1232 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 Pfam PAZ domain 891 1035 IPR003100 GO:0005515
Pte17g01394 1676 ProSiteProfiles PAZ domain profile. 901 1014 IPR003100 GO:0005515
Pte17g01394 1676 FunFam Endoribonuclease dicer-like 1 1246 1417 - -
Pte17g01394 1676 FunFam Endoribonuclease dicer-like 1 576 672 - -
Pte17g01394 1676 SUPERFAMILY RNase III domain-like 1251 1416 IPR036389 GO:0004525|GO:0006396
Pte17g01394 1676 SMART helicmild6 427 513 IPR001650 -
Pte17g01394 1676 CDD RIBOc 1268 1419 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 FunFam Dicer-like 104 1034 1223 - -
Pte17g01394 1676 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 552 IPR001650 -
Pte17g01394 1676 PANTHER DICER-RELATED 61 1490 - -
Pte17g01394 1676 Gene3D - 1588 1667 - -
Pte17g01394 1676 SUPERFAMILY RNase III domain-like 1046 1230 IPR036389 GO:0004525|GO:0006396
Pte17g01394 1676 Pfam Ribonuclease III domain 1287 1395 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 Pfam Ribonuclease III domain 1076 1211 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 FunFam Dicer-like 104 891 1011 - -
Pte17g01394 1676 Gene3D - 383 548 IPR027417 -
Pte17g01394 1676 Pfam Dicer dimerisation domain 581 667 - -
Pte17g01394 1676 Gene3D Dicer dimerisation domain 576 674 IPR038248 -
Pte17g01394 1676 ProSitePatterns Ribonuclease III family signature. 1287 1295 IPR000999 GO:0004525|GO:0006396
Pte17g01394 1676 Gene3D Ribonuclease III domain 1239 1417 IPR036389 GO:0004525|GO:0006396
Pte17g01394 1676 Gene3D Ribonuclease III domain 1053 1226 IPR036389 GO:0004525|GO:0006396
Pte17g01394 1676 SMART PAZ_2_a_3 878 1038 IPR003100 GO:0005515
Pte17g01394 1676 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 208 IPR014001 -
Pte17g01394 1676 FunFam Endoribonuclease dicer-like 1 384 547 - -
Pte17g01394 1676 CDD DEXHc_dicer 45 238 - -
Pte17g01394 1676 Pfam Helicase conserved C-terminal domain 408 510 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01394 Pte-Chr17 28596732 28607440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01394 462 561 Eukaryotic Initiation Factors Gene Family AT1G72730 29.703 6.11e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01394 K11592 - qsa:O6P43_019158 2049.63