Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01383 ATGAATGCTAAGCAGGAAACTCTGAAACCTATTGAAGTAGGCATGTCTGAGAAGACAGCTACCCATGATGGTGGTGAAGTGGTGATCGTGATTCCTAGCGACGGGACACCGACAACAAGTGAAGATGGAAAAGACTTGAAGTGTTCTGCAGCATTGCCAACAAAGCAGGGGAAGATGGATTCGCCTCACCATGTTTCCCGCGAGATCAACAGCCCTTCCCCCGAGTTTTCCAAGTTCAGGTCCAGCCCCAATAAGCCTCCTAAAATTCCTACGAGGGATGAAAATCTTGCCAGGAGAAAATCCATGGCAAGGTTAGTGTCCTCCAAACCCAAATCTAGGTTTGTTGAAGAGAAGTATGTTGCTGATCAAACCATGTTTGAAGAGAATGATGGTCCAACGCCCAAAGGATGTCCCAGTTTTGGTTCGCCTTATGCCAATTCATTCAACAGATTGTCGCCTAATACCAAAACAGGTATTGTTACTAGGATGGTTTCTATTGCTTCCACCGTTCAAGGAGCACCAAAGGAGGATGATGATGACATTATCCAGAAGATTGAATCAAGCAAGTGGAAGCGTAAGAGACTAAGGACTAAGGTATTGCTTGAATGGATTGCTTTTGTCTGCATTACGGGATGCTTAGTGGCCAGTCTGACTGTTGAAAAACTGGTACATTTAATGGTTTGGGGTTTGGAAGTTTGGAAATGGTGTTTGCTTGTGATGGTGATCTTTTTTGGTATGTTGGTTACGAAATGGTTCATGAGGCTTGTTGTTTTCCTGATTGAGTTGAACTTTTTGTTGAAGAAGAAGGTGCTGTACTTTGTTTATGGGCTGAAGAAGAGTGTGCAGGTCTTCATTTGGATAGGCGTGGTTCTTCTTACTTGGGTATTGTTAATCAAGCGGGTTGAACGGTCTCAACTGGCTAACAAAATTCTTGATTCTGTGACATGGACACTCGTGTCTCTCTTAATAGGAGCATTCTTGTGGTTGTTGAAGACGTTGTTGCTTAAGATATTAGCTTCAAATTTCCATGTCAACACTTTCTTCGATAGAATTCAGGAGTCCATCTTCCATCAATATATACTGAGAGTACTTTCAGGGCCTCCGCTGATCGAGGAAGCTGAGAGGGTCGGGAGATCAGCAAGCACTGGCCAATTTAGTTTCAGAAGCACTGTGGGTAAAGGGAAAACCAAGAAAGAGGTTATTGATATAGGGAAGCTGCACAAGATGAAACAGGAAAAAGTATCTGCTTGGACGATGAAGATGTTGATGGATGCAGTGTCAAGTTCTGGGCTTTCGACAGTATCAAATGAATTAGAGGAAAGTTTTTATGACGGTTTAGCGGGACCAGTAGATAAGGAAATCACCAGCGAGATGGAAGCAACCGCTGCTGCCTATCACGTTTTCAGAAATGTTGCTCAGCCCGGTTGCTCTTACATTGATGAAGACGACCTCCTTAGATTCATGATCAGGGAAGAACTGGCCTTGGTGTTTCCACTTTTTGAAGGCGCAGAGAGTGGTCGAATTGACCGGAAGGCATTGACAAACTGGGTGGTAAAAGTTTACCAGGGTCGTAAAGCGCTTGCACATGCCTTAAATGACACCAAAACAGCTGTGAAACAGTTGAACAAACTTGTTACAGGGATTTTGGTTGTTGTGACCATAATTGTATGGCTTTTGTTGATGGGAATTGCGACCACTAAAGTTATTCTGTTTCTGTCATCACAACTTGCTGTAGCAGCCTTTATGTTTGGAAACACATGCAAGCAAATTTTTGAAGCCATTATCTTCGTGTTCGTGATGCATCCTTTTGATGTGGGTGATCGTTGCGTTGTTGATGGAGTTCCGATGTTGGTCGAAGAGATGAATATCTTGACTACAGTTTTCTTGAAGCTAGATAATGAGAAGGTTTTCTACCCAAATTCAGTGCTGGCTATGAAACCTATCAGCAACTATTACAGAAGCCCGGATATGGGGGATGGCATAGAATTCTCAGTTGACTTTTTGACACCAATAGAGAGGATTGGGGCAATGAAAGAGAAAGTTGCAAAGTACTTGGAGAAAAATCCTCAGCATTGGACTCCTAACTTCAGTATGGTAGTGAAGGAGATAGAGAATGTGAACAAGATAAAGATCGCCATCTATGTGACGCACACTATGAACTTTCAAAACTACGGAGAGAAGAATAACCGGAGATCTGCACTAGTCATGGAATTGAAGAAAATATTTGAAGAATTGAATATCAGTTACAACCTTCCTGCTCAGGCTGTTCATCTCCATCATGTTGGTTCAGAGACTACTACTCCCAGAAAATGA 2313 0.4272 MNAKQETLKPIEVGMSEKTATHDGGEVVIVIPSDGTPTTSEDGKDLKCSAALPTKQGKMDSPHHVSREINSPSPEFSKFRSSPNKPPKIPTRDENLARRKSMARLVSSKPKSRFVEEKYVADQTMFEENDGPTPKGCPSFGSPYANSFNRLSPNTKTGIVTRMVSIASTVQGAPKEDDDDIIQKIESSKWKRKRLRTKVLLEWIAFVCITGCLVASLTVEKLVHLMVWGLEVWKWCLLVMVIFFGMLVTKWFMRLVVFLIELNFLLKKKVLYFVYGLKKSVQVFIWIGVVLLTWVLLIKRVERSQLANKILDSVTWTLVSLLIGAFLWLLKTLLLKILASNFHVNTFFDRIQESIFHQYILRVLSGPPLIEEAERVGRSASTGQFSFRSTVGKGKTKKEVIDIGKLHKMKQEKVSAWTMKMLMDAVSSSGLSTVSNELEESFYDGLAGPVDKEITSEMEATAAAYHVFRNVAQPGCSYIDEDDLLRFMIREELALVFPLFEGAESGRIDRKALTNWVVKVYQGRKALAHALNDTKTAVKQLNKLVTGILVVVTIIVWLLLMGIATTKVILFLSSQLAVAAFMFGNTCKQIFEAIIFVFVMHPFDVGDRCVVDGVPMLVEEMNILTTVFLKLDNEKVFYPNSVLAMKPISNYYRSPDMGDGIEFSVDFLTPIERIGAMKEKVAKYLEKNPQHWTPNFSMVVKEIENVNKIKIAIYVTHTMNFQNYGEKNNRRSALVMELKKIFEELNISYNLPAQAVHLHHVGSETTTPRK* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01383 770 PIRSF Memb_At2g17000 16 769 IPR016688 -
Pte17g01383 770 MobiDBLite consensus disorder prediction 1 20 - -
Pte17g01383 770 MobiDBLite consensus disorder prediction 31 93 - -
Pte17g01383 770 Gene3D - 602 651 IPR023408 -
Pte17g01383 770 SUPERFAMILY Sm-like ribonucleoproteins 592 651 IPR010920 -
Pte17g01383 770 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 15 761 IPR016688 -
Pte17g01383 770 FunFam Predicted mechanosensitive ion channel 602 651 - -
Pte17g01383 770 MobiDBLite consensus disorder prediction 66 80 - -
Pte17g01383 770 Pfam Mechanosensitive ion channel 543 748 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01383 Pte-Chr17 28518551 28522230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01383 71 758 Mechanosensitive Ion Channel Family AT5G12080 60.029 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01383 K22048 - qsa:O6P43_019135 1056.97