Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01382 ATGTTGGAGAGTTCTATCAGCAGTGTGATCCAGAAGGTTGCTCTAAGTGCGCTTCATAGGGAGCAATGGGAAGTCAACTTACCAGCTGAGGAGGTGCCTCCAGAGCTCCCAGAGCTTGCCTTGGGTATTAACTTTGCTAGAGATGGTATGCAAGAGAAGGATTGGCTGTCCTTGGTTGCAGTTCACAGTGGGAAATGGTTACTTGCGGTTGCCTTTTATTTCGGTTCTAGGTTTGGATTTGACAAGACTGACAGAGAGAGATTGTTTAACATGATAAACGATCTTCCAACAATATTTGAAGTTGTGACTAGAGCAGTCAAGAAACAAACCAAGGAAAAGTCAAATCATAGCAGCAGCAAGTCAAAATCAAACTCCAAGGGAGGTCCTGAATCTCAGGCAAAAAATTCCAAGGCAATTCAATCAAAATATGAAGACGAGGATGTTTTGGATGAAGAGGATGACGACGAGCATGGAGAAATATTATGTGGGGTGTGTGGGGAGCATTACGCAAATGACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTCCATGGAAAGTGTGTGAACATCACCCCTGCTAGAGCTGAGCATATCAAGCAGTACAAATGTCCATCGTGCAGTAACAATAGAGCTCGTCCGTAA 648 0.4398 MLESSISSVIQKVALSALHREQWEVNLPAEEVPPELPELALGINFARDGMQEKDWLSLVAVHSGKWLLAVAFYFGSRFGFDKTDRERLFNMINDLPTIFEVVTRAVKKQTKEKSNHSSSKSKSNSKGGPESQAKNSKAIQSKYEDEDVLDEEDDDEHGEILCGVCGEHYANDEFWICCDICEKWFHGKCVNITPARAEHIKQYKCPSCSNNRARP* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01382 215 SUPERFAMILY FYVE/PHD zinc finger 151 212 IPR011011 -
Pte17g01382 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 210 IPR013083 -
Pte17g01382 215 Pfam PHD-finger 162 210 IPR019787 -
Pte17g01382 215 ProSitePatterns Zinc finger PHD-type signature. 162 208 IPR019786 -
Pte17g01382 215 ProSiteProfiles Zinc finger PHD-type profile. 159 211 IPR019787 -
Pte17g01382 215 SMART PHD_3 161 209 IPR001965 -
Pte17g01382 215 MobiDBLite consensus disorder prediction 109 154 - -
Pte17g01382 215 Pfam Alfin 12 103 IPR021998 GO:0006355|GO:0042393
Pte17g01382 215 PANTHER CPG BINDING PROTEIN 14 214 IPR045104 GO:0006355|GO:0042393
Pte17g01382 215 FunFam PHD finger alfin-like protein 154 210 - -
Pte17g01382 215 CDD PHD_AL_plant 161 211 IPR044104 -
Pte17g01382 215 MobiDBLite consensus disorder prediction 120 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01382 Pte-Chr17 28483723 28485832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01382 11 216 Alfin-like Transcription Factor Family AT3G42790 67.150 1.69e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte17g01382 Alfin 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01382 K26274 - tcc:18588119 322.013