Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01370 ATGATCTATTGTCCAGGTCATGGTTTTGCGGCAGTTAACTTGAAGATTGTGTTTCTTCCCTTGTTAATTTTTGAAATCATTATTCTAGCAGACAACTTCAGAATGTGCAGGGCTCTGTTGCCTGGGGATGATGAAAGCTTGAGTGATGGTGCCATATGGGAAACCCTTCCGCATTTTTGGGTTGCAATCTCCATGGTCTTCTTCATTGCTGCATCTGTATTTACCCTCCTAAAGCTCAGTGGCGATGTGGGTGCTCTGAGCTGGTGGGACTTATTTATTAACTTTGGAATTGCAGAATGCTTCGCATGTCTTGTTTGTACCAAATGGTCAAATCCCGTCATTCATAGGAATTCCTCACCTGTAGAAGCCACTTCATCTTCTGCGGCAATTAGATATCTTGATTGGAATAATGGTTTGGTAGTCTCTTCAGAGGAGAATCATCAGCACAGAATGTGTGGCATGCAAGAGATAGGAGGACATTTCATGAAGATCCCAGTGGTTGCATTCCAAGTTCTGCTTTGTATGCGCCTAGAGGGAACACCTGCGTGGGCTAGAAATATATCACCTTCAGTACTCTTCTCTCCTCTTTTCGTCTTGCAAGGTGTCGGCGTGCTGTTTGCTTTATCTAAATTGATGGAGAAGATTGTAATTATATTACGTAGTGAGGCTGGTTCTGGAATATACTTTAGATTTACATCTAGAGCGCATGATTGCATGGGGTTCTTACATCATGGTTCTAGACTACTGGGCTGGTGGTCAATTGATGAAGGAAGTCGGGAGGAACAGGCTCGGCTATATTATGAGGGCGCATCAGGGTATAACACATTCTGTGGTTATCCACCTGAGATTGTTAAGAAGATGCCTAAAAGAGACCTAGCAGAGGAGGTTTGGCGACTCCAAGCAGCTCTTGGCGAGCAGACAGAAATCACAAAATACAATCAACAGGAGTATGAAAGACTCCAGAACGAAAAAGTGCTGTGTAGGGTGTGCTTTGAGAAAGAGATCACTGTTGTATTGCTTCCATGTAGGCATCGAGTTCTTTGCAGTGCCTGCTCTGAGAAGTGTAAAAAATGTCCCATTTGCCGCGTATCTATTGAGGAGCGCTTACCTGTATATGATGTTTAG 1125 0.4364 MIYCPGHGFAAVNLKIVFLPLLIFEIIILADNFRMCRALLPGDDESLSDGAIWETLPHFWVAISMVFFIAASVFTLLKLSGDVGALSWWDLFINFGIAECFACLVCTKWSNPVIHRNSSPVEATSSSAAIRYLDWNNGLVVSSEENHQHRMCGMQEIGGHFMKIPVVAFQVLLCMRLEGTPAWARNISPSVLFSPLFVLQGVGVLFALSKLMEKIVIILRSEAGSGIYFRFTSRAHDCMGFLHHGSRLLGWWSIDEGSREEQARLYYEGASGYNTFCGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYNQQEYERLQNEKVLCRVCFEKEITVVLLPCRHRVLCSACSEKCKKCPICRVSIEERLPVYDV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01370 374 Pfam Zinc finger, C3HC4 type (RING finger) 324 367 - -
Pte17g01370 374 SUPERFAMILY RING/U-box 318 369 - -
Pte17g01370 374 Pfam Transmembrane Fragile-X-F protein 10 199 IPR019396 -
Pte17g01370 374 FunFam Baculoviral IAP repeat containing 7 336 372 - -
Pte17g01370 374 ProSiteProfiles Zinc finger RING-type profile. 327 362 IPR001841 -
Pte17g01370 374 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 9 374 - -
Pte17g01370 374 FunFam Kinesin-like protein KIN-7D, mitochondrial 304 372 - -
Pte17g01370 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 372 IPR013083 -
Pte17g01370 374 SMART ring_2 327 361 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01370 Pte-Chr17 28401010 28406009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01370 11 375 C3H Transcription Factor Family AT1G73950 72.603 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01370 - - rcu:8286742 643.654