Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01354 ATGGACAGCTCAGAAGTCTCATCATCTCCAAACCTATGTATAGGTGCTCCCTTGATGCCTCTAGAAGAAGATAAACTGCAAAAACAGAAGGAGGAGGCGGCTGCAAATATGGTTCCAAGAAGATCAAACAGCAGTGGAAGAAAATTTCTAGGAGTGAGACAAAGGCCTTCGGGAAGATGGGTTGCTGAGATCAAGGACTCCTCACAAAAGCTGAGGTTATGGCTTGGAACATTTGACCGACCGGAAGATGCTGCTTTAGCTTATGACAGTGCTGCGAGGCTTCTAAGAGGAAAAAATGCAAAGACAAACTTCTCATGTGCTCCTGAGTTTTCCAAGAAAAACACTCATCATGATCAGGGAATGGGTTGCAGCTTTCTCGGAAAGAATCCAAGGGCTTATCATCTCCTTCAACATGCAGTGATGAAGAACCGAGCAGTATACTCCTCTCTGTGTTCAACAATATTGCCATGGAAAAATCAAACCATGATGAGAGATCAACAAGATTACGATACCCTCGTTGAAGAAACTGTAGTTTGTTCTTCAAGCTCTGATGAAGGAGGGTCAGGATGCAGCGAACTTTCATTTGGAAGTTCCAAGGTTTATTCTTCTGTTATTGTTGCTCCTTCTTTCAGTTCAAACAAGAGAATAGGATGA 654 0.4297 MDSSEVSSSPNLCIGAPLMPLEEDKLQKQKEEAAANMVPRRSNSSGRKFLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDRPEDAALAYDSAARLLRGKNAKTNFSCAPEFSKKNTHHDQGMGCSFLGKNPRAYHLLQHAVMKNRAVYSSLCSTILPWKNQTMMRDQQDYDTLVEETVVCSSSSDEGGSGCSELSFGSSKVYSSVIVAPSFSSNKRIG* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01354 217 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Pte17g01354 217 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Pte17g01354 217 Pfam AP2 domain 49 97 IPR001471 GO:0003700|GO:0006355
Pte17g01354 217 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Pte17g01354 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 123 - -
Pte17g01354 217 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Pte17g01354 217 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Pte17g01354 217 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Pte17g01354 217 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Pte17g01354 217 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01354 Pte-Chr17 28269943 28270596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01354 27 105 AP2-EREBP Transcription Factor Family AT5G19790 58.228 5.37e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte17g01354 AP2 6.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01354 K09286 - gmx:100807374 246.128