Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01340 ATGGAGATCTCTCAGACCCGTGCTTTTGGGAGTGAAGGAAGAAAATCGACGCATGACTTTCTGTCATGCTACAGTCATTCAACTTCACAGCAAGATCCAGGACCACCTTCTCAAGATAATTACCTCAAGACCCATGACTTCTTGCAACCACTAGAGCTAGTGGAAAGGAAGAGCTTTACCACGGCGGATGACATGTCAGTTCATCAAAGGCATTGGGCGCCACCTCCTCCCATTGAACACCTTCTACCTGGAGGGATGGGAACTTACACCATAAGCCATATTTCGTACGTTAACCAAAGGGCTCCAAAGTCGGACGACGGATCAAAATTTCATGTGGCTCAATCTACTAGCATGGATCGAAATTACGAGAGCTGTAGTTCTTACACAGGAGGTGGTTTCACTTTGTGGGAAGAATCTGCGTCTAAAAAGAGAAAGGCAGGGAAGGAGAATATAGCACAGACATCCACTCTAGGAGCTTTGACAGATTCAGCATCAATGGCATCGCAATGGACGGCTTCATCAGAACGTCCGTCCCAGCCATCTTCCAATAACAGTCGTATCTGCTACACCTCTCATTCTTCTCAGACAAAGGGGCTGAAAAACCCGAGCTTTTTTGACATTATAAAATCAGCAGAAGTTAACACTCATGAAGAGGAATTAGACGATGGAGAAGAATTCACAATCAAGCCAGAATTCAAAATTAGCGTAAAAGGCGACTTGAAGGTGAAAGTGGACGGCCTGAGCACAGAACAAAAACCAAACACGCCAAGATCAAAACACTCGGCAACCGAGCAGCGTAGAAGAAGCAAAATCAACGACAGATTCCAGATCCTGAGAGAGTTAATTCCACTCGGGGACCAAAAAAGAGACAAGGCGTCATTGCTGTTAGAGGTTATCGAGTATATTCACTTTTTACAAGAGAAGGTACATAAGTACGAAGGATCGTTTCAAGAGTGGAAACACAAACCGGAAAAATTAATGCCATTGAGAAACAATCCAAGGCCTGGAGAAAGTTTTGTTCACCAATCTTGTGGTGTGAAAAAAGGCTCAACTCCAGCATTGTTGTTTGCAGGGAGTATTAATGAGAAAGTTGTCACAACATCCCGAGCAATACCTATGACTGTACAGCACATGCTGGAGTTGGAAATGAACACTGGAACCAACTTAAAAGCAAGTGATAAACACCCTGGAACAACGAAGCATGCCATGGCACTCCCATTGCAGCTAAATTCCTTAAATTCTCTTGGTAACAGTAGTGCGGTATCCCTGGTCCCACCTAGACTTGCATCTGAAAATACATCCCAGCCTCAAGTTACACAGTACCCCACCTGTGCTTGTGTTACAGATGCCAATGCTTCCGGTGATAAGTTGAAAGGAAACGATTTGGCCATTGAAGGTAGTACCATTAGCATCTCCAGAGTGTACTCTCAAGGGTTGTTAAATACTCTTACTCAGGCTCTACAGAGATCTGGAGTTGATTTATCTCAAGGAAGTATTTCCGTGCAAATTGAGGTAGGTAAGCAAGCAACTAATGAACTGTAG 1542 0.441 MEISQTRAFGSEGRKSTHDFLSCYSHSTSQQDPGPPSQDNYLKTHDFLQPLELVERKSFTTADDMSVHQRHWAPPPPIEHLLPGGMGTYTISHISYVNQRAPKSDDGSKFHVAQSTSMDRNYESCSSYTGGGFTLWEESASKKRKAGKENIAQTSTLGALTDSASMASQWTASSERPSQPSSNNSRICYTSHSSQTKGLKNPSFFDIIKSAEVNTHEEELDDGEEFTIKPEFKISVKGDLKVKVDGLSTEQKPNTPRSKHSATEQRRRSKINDRFQILRELIPLGDQKRDKASLLLEVIEYIHFLQEKVHKYEGSFQEWKHKPEKLMPLRNNPRPGESFVHQSCGVKKGSTPALLFAGSINEKVVTTSRAIPMTVQHMLELEMNTGTNLKASDKHPGTTKHAMALPLQLNSLNSLGNSSAVSLVPPRLASENTSQPQVTQYPTCACVTDANASGDKLKGNDLAIEGSTISISRVYSQGLLNTLTQALQRSGVDLSQGSISVQIEVGKQATNEL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01340 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 330 IPR036638 GO:0046983
Pte17g01340 513 MobiDBLite consensus disorder prediction 245 269 - -
Pte17g01340 513 CDD bHLH_AtBIM_like 254 330 - -
Pte17g01340 513 Gene3D - 253 329 IPR036638 GO:0046983
Pte17g01340 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 305 IPR011598 GO:0046983
Pte17g01340 513 MobiDBLite consensus disorder prediction 167 197 - -
Pte17g01340 513 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 512 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pte17g01340 513 SMART finulus 261 311 IPR011598 GO:0046983
Pte17g01340 513 Pfam Helix-loop-helix DNA-binding domain 257 306 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01340 Pte-Chr17 28161785 28168771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01340 1 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 40.481 2.37e-86 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g01340 HLH 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01340 - - cpap:110823217 526.168