Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01334 ATGGAGATCTCTCAGACCCGTGCTTTTGGGAGTGAAGGAAGAAAATCGACGCATGACTTTCTGTCATGCTACAGTCATTCAACTTCACAGCAAGATCCAGGACCACCTTCTCAAGATAATTACCTCAAGACCCATGACTTCTTGCAACCACTAGAGCTAGTGGAAAGGAAGAGCTTTACCACGGCGGATGACATGTCAGTTCATCAAAGGCATTGGGCGCCACCTCCTCCCATTGAACACCTTCTACCTGGAGGGATGGGAACTTACACCATAAGCCATATTTCGTACGTTAACCAAAGGGCTCCAAAGTCGGACGACGGATCAAAATTTCATGTGGCTCAATCTACTAGCATGGATCGAAATTACGAGAGCTGTAGTTCTTACACAGGAGGTGGTTTCACTTTGTGGGAAGAATCTGCGTCTAAAAAGAGAAAGGCAGGGAAGGAGAATATAGCACAGACATCCACTCTAGGAGCTTTGACAGATTCAGCATCAATGGCATCGCAATGGACGGCTTCATCAGAACGTCCGTCCCAGCCATCTTCCAATAACAGTCGTATCTGCTACACCTCTCATTCTTCTCAGACAAAGGGGCAGAAAATCCCGAGCTTTTTTGACATTATAAAATCAGCAGAAGTTAACACTCATGAAGAGGAATTAGACGATGGAGAAGAATTCACAATCAAGCCAGAATTCAAAATTAGCGTAAAAGGCGACTTGAAGGTGAAAGTGGACGGCCTGAGCACAGAACAAAAACCAAACACGCCAAGATCCAAACACTCGGCAACCGAGCAGCGTAGAAGAAGCAAAATCAACGACAGATTCCAGATCCTGAGAGAGTTAATTCCACTCGGGGACCAAAAAAGAGACAAGGCGTCATTGCTGTTAGAGGTTATCGAGTATATTCACTTTTTACAAGAGAAGGTACATAAGTACGAAGGGATCGTTTCAAGAGTGGAAACACAAACCGGAAAAATTAATGCCATTGAGAAACAATCCAAGGCCTGGAGAAAGTTTTGTTCACCAATCTTGTGGTGTGAAAAAAGGCTCAACTCCAGCATTGTTGTTTGCAGGGAGTATTAA 1083 0.4441 MEISQTRAFGSEGRKSTHDFLSCYSHSTSQQDPGPPSQDNYLKTHDFLQPLELVERKSFTTADDMSVHQRHWAPPPPIEHLLPGGMGTYTISHISYVNQRAPKSDDGSKFHVAQSTSMDRNYESCSSYTGGGFTLWEESASKKRKAGKENIAQTSTLGALTDSASMASQWTASSERPSQPSSNNSRICYTSHSSQTKGQKIPSFFDIIKSAEVNTHEEELDDGEEFTIKPEFKISVKGDLKVKVDGLSTEQKPNTPRSKHSATEQRRRSKINDRFQILRELIPLGDQKRDKASLLLEVIEYIHFLQEKVHKYEGIVSRVETQTGKINAIEKQSKAWRKFCSPILWCEKRLNSSIVVCREY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01334 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 320 IPR036638 GO:0046983
Pte17g01334 360 Gene3D - 252 331 IPR036638 GO:0046983
Pte17g01334 360 MobiDBLite consensus disorder prediction 245 268 - -
Pte17g01334 360 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 328 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pte17g01334 360 MobiDBLite consensus disorder prediction 18 41 - -
Pte17g01334 360 CDD bHLH_AtBIM_like 254 337 - -
Pte17g01334 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 305 IPR011598 GO:0046983
Pte17g01334 360 MobiDBLite consensus disorder prediction 167 197 - -
Pte17g01334 360 MobiDBLite consensus disorder prediction 1 41 - -
Pte17g01334 360 Pfam Helix-loop-helix DNA-binding domain 257 306 IPR011598 GO:0046983
Pte17g01334 360 SMART finulus 261 311 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01334 Pte-Chr17 28113506 28120500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01334 1 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 46.765 1.20e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g01334 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01334 - - cpap:110823217 367.851