Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01323 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAACAGGCAAGTGACTTTCTCTAAGAGGAGGTCAGGGTTGCTCAAAAAAGCTCATGAGATTTCCGTACTTTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCCACTAAAGGCAAGCTCTCTGAGTATTCTAGTGATTCCTGCATGGAGAGAATTCTTGAACGTTATGAGAGGTACTCACATGCAGAGAGGCAGCTGCTTGTCAGTCCCCCAGAATTAGATGGAAACTGGATGTTGGAATATGCAAAGCTCAAAGCTAGGACGGAGGTCTTGCAAAGAAACCAAAGGCATTTCAAAGGAGAAGATCTTCATGGTCTCAGTCTCAAAGAGCTTCAGAATTTGGAACACCAGCTTGAGTCTGCACTCAAGCAGATACGATCGAAGAAGAACCAACTGGTGTATGAATCAATAGCTAACATTCAGAAAAAGGATAAGGCGTTGCAGGAGCAAAACAACATTCTGGCAAAGAAGGTGAACGAGAAAGAGAAGGAATTGGCTCAACTGGCACAATGGGAGCAGCAAAATCATGCAATGGAGAAATCCTCAGTTCCACCACAACAATTTCAGTCCTTGAGTATTGGGTTTGACTCTGTTCTCTTCTCTTCCACTCCATCTCAACTTGTATATTATGTCGCTAGATTAATGGCAGGCTTTTGA 699 0.4378 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLSEYSSDSCMERILERYERYSHAERQLLVSPPELDGNWMLEYAKLKARTEVLQRNQRHFKGEDLHGLSLKELQNLEHQLESALKQIRSKKNQLVYESIANIQKKDKALQEQNNILAKKVNEKEKELAQLAQWEQQNHAMEKSSVPPQQFQSLSIGFDSVLFSSTPSQLVYYVARLMAGF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01323 232 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01323 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte17g01323 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte17g01323 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte17g01323 232 Coils Coil 122 145 - -
Pte17g01323 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte17g01323 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Pte17g01323 232 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte17g01323 232 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pte17g01323 232 Pfam K-box region 90 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01323 232 Coils Coil 151 195 - -
Pte17g01323 232 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pte17g01323 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte17g01323 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte17g01323 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte17g01323 232 Pfam Aluminium activated malate transporter 112 206 IPR020966 GO:0015743
Pte17g01323 232 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01323 Pte-Chr17 28043971 28045887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01323 1 203 MADS-box Gene Family AT1G26310 63.285 1.97e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte17g01323 ALMT 8.7e-06 CL0307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01323 K09264 - cave:132175414 325.865