Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01322 ATGGGAAGGGGTAGAGTTGAGCTTAAGAGGATAGAGAACAAAATCAACAGGCAGGTAACGTTTACCAAGAGAAGAAATGGACTGCTCAAGAAGGCATACGAACTTTCTGTACTTTGTGATGCTGAAGTTGCCCTCATTATTTTCTCTAACCGTGGCAAGCTTTATGAGTTCTGCAGCACCTCCAACATGGTGAAAACCCTCGAAAAATATCAGAAGTGCAGCTATGGTTCATTAGAGGCCAATCGAAGCGTGGCTGACACCCAGAATAGCTATCAGGAATACTTAAAACTGAAATCAAAGGTCGAGGTCTTGCAACGTTCACAAAGGAACCTTCTGGGAGAAGATCTTGCCTCACTGGGTACGAAGGATCTTGAGCAACTTGAGCACCAGCTAGAGGGCTCTTTGAAGCAAATTAGAACAACAAAGACTCAGTTCATGCTTGATCAACTTGCTGATCTTCAAAGTCGGTTGGAAGAAAGTAGCATCCAGTTTCCTCTGAGACTAGGTTGGGACGGCGGCAGTGGGCACAACTTCCACTATAACCGCCTAATGCCTCCACGATCAGAAGGGCTATTTCAGTCTTTGGAAGTAAATCCCAGCTGTTTGCAACATAGTTACAACCCTATGAGTTCTGAAGAAGCAAACGTTGGATCATCGTCCCTACACGTTAATGGATTCATTCCAGGATGGATGCTTTGA 699 0.4478 MGRGRVELKRIENKINRQVTFTKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMVKTLEKYQKCSYGSLEANRSVADTQNSYQEYLKLKSKVEVLQRSQRNLLGEDLASLGTKDLEQLEHQLEGSLKQIRTTKTQFMLDQLADLQSRLEESSIQFPLRLGWDGGSGHNFHYNRLMPPRSEGLFQSLEVNPSCLQHSYNPMSSEEANVGSSSLHVNGFIPGWML* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01322 232 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Pte17g01322 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte17g01322 232 ProSiteProfiles K-box domain profile. 87 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01322 232 Coils Coil 124 144 - -
Pte17g01322 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pte17g01322 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte17g01322 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte17g01322 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte17g01322 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte17g01322 232 Pfam K-box region 86 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01322 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte17g01322 232 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pte17g01322 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Pte17g01322 232 FunFam MADS-box transcription factor 1 13 94 - -
Pte17g01322 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01322 Pte-Chr17 28037175 28041587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01322 1 233 MADS-box Gene Family AT5G15800 56.981 3.18e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte17g01322 K-box 2.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01322 K09264 - zju:125422541 326.635