Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01312 ATGAAGCTAAGAGCTATTTTGCCATCCAGTCATAATACTCAAGTTCTGTCAGGAAACATCCAGAATCTGGGTCTAATCAAAATACAGGATTATACTCCCAATGATATTCCAAACAAGTCAGAAAATGCTGCTCCATCTTCTCGTTTGGCAATGACACGTAGAGTTCTTCCTCTTTTGTCTTTTAATCCATACCTGGGTAATTGGATCATAAAAGTTCGTGTCACAAACAAGGGGATCATGCGTACCTATAAAAATGCCAGAGGGGAAGGTAGTGTCTTCAATTTGGAGTTGACAGATGAAGACGGCACACAAATTCAATCTACAATGTTTAATGAAACTGCAAGGAAGTTGTATGCAAAGTTTGAACTCGGCAAGGTCTATTTCACTTCCGAAGGATCTCTTAGAGTTGCCAACAAACAATTCAGATCTGTTCGAAATGATTATGAGATGACATTAAATGAGAACTCTGAAGTGGAAGAAGCGAGCAACGAAGCTTGTTTTGTTCCGGAGACAAAATTCAGTTTTGTACCTATTCATCAATTGGGTCCTTACGTCGATGGAAGAGAACTTGTGGATATAATTGGAGTAGTTCAGACGGTGTCTCCTACAATGAGCATCCGGAGAAGGTGCAACAATGAGACAATACCAAAGCGTGATATAACTGTTGCCGATGAAACCAAGAAGACAGTTGTTGTCTCTTTATGGAATGAGCACGCAACAACAATTGGGCAGGAGCTGTTGGATTTGGCTGATATATCTCCGGTAGTTGCAATTAAATCTGTAAGGGTTGGGGATTTTCAAGGTATGACTATTGAAGGTAAGGAGACTTATATGGCTTCCGTCAGCTCGAGTTCGAGTTCATCATCAAAGAGCGGCGGAAGATCGATGTATTCCGACCGTGCCCCACTTTCTCACATACTATCAAACGCATCACTGGGGGAGGATAAGGAAGGTGAAGAAAATCCCTATCAATTGAAATTGAAAGAGGCAACTTGGGTTCCTCATCTTTTCCGGGTTAGCGTTTCTCAACACGAGTATATGCATGAAAATAGGCAAAGGATAACCGCAAGAGCTGCTGCTCCTGTTGATTTTGCTGCTGAATCGAGATTTCTTCTTGAAGAGATTTCAAAGATGACAGTTTCTGAGTAG 1149 0.4134 MKLRAILPSSHNTQVLSGNIQNLGLIKIQDYTPNDIPNKSENAAPSSRLAMTRRVLPLLSFNPYLGNWIIKVRVTNKGIMRTYKNARGEGSVFNLELTDEDGTQIQSTMFNETARKLYAKFELGKVYFTSEGSLRVANKQFRSVRNDYEMTLNENSEVEEASNEACFVPETKFSFVPIHQLGPYVDGRELVDIIGVVQTVSPTMSIRRRCNNETIPKRDITVADETKKTVVVSLWNEHATTIGQELLDLADISPVVAIKSVRVGDFQGMTIEGKETYMASVSSSSSSSSKSGGRSMYSDRAPLSHILSNASLGEDKEGEENPYQLKLKEATWVPHLFRVSVSQHEYMHENRQRITARAAAPVDFAAESRFLLEEISKMTVSE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01312 382 MobiDBLite consensus disorder prediction 277 295 - -
Pte17g01312 382 Pfam OB-fold nucleic acid binding domain 69 154 IPR004365 GO:0003676
Pte17g01312 382 Pfam Replication factor-A C terminal domain 295 371 IPR013955 -
Pte17g01312 382 Pfam Replication protein A OB domain 188 272 IPR031657 -
Pte17g01312 382 Gene3D - 54 163 IPR012340 -
Pte17g01312 382 SUPERFAMILY Nucleic acid-binding proteins 173 271 IPR012340 -
Pte17g01312 382 Gene3D - 299 378 IPR012340 -
Pte17g01312 382 FunFam Replication protein A subunit 54 163 - -
Pte17g01312 382 SUPERFAMILY Nucleic acid-binding proteins 57 163 IPR012340 -
Pte17g01312 382 Gene3D - 168 291 IPR012340 -
Pte17g01312 382 PANTHER REPLICATION FACTOR A 1, RFA1 68 344 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte17g01312 382 CDD RPA1_DBD_B 190 271 - -
Pte17g01312 382 CDD RPA1_DBD_A 57 160 - -
Pte17g01312 382 MobiDBLite consensus disorder prediction 277 299 - -
Pte17g01312 382 FunFam Replication protein A subunit 167 289 - -
Pte17g01312 382 SUPERFAMILY Nucleic acid-binding proteins 310 379 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01312 Pte-Chr17 27949291 27951935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01312 316 383 Core DNA Replication Machinery Family AT5G08020 63.235 3.06e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01312 K07466 - ming:122076780 407.142