Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01310 ATGGCTTTCCTTAGTAAAGTTGGGAATATACTGAGGCAGACAGTGAACAGGCAGTTCAACTCTGAAGTGCGTTCAACATCGATTTTTGCATCGATAAGATGCATGTCCACTTCTACATCCTCTAAACTTTTTATTGGAGGATTGTCATATGGTATCGACGAAGCATCTTTGAGGCAAGAGTTTGCTAAATATGGCGAAGTTATGGAAGCAAGAATAATCCACGACCGTGAGACTGGTAGGTCCAGAGGTTTTGGCTTTGTTACTTTTACTAACGCTGAGGAGGCATCAAGTGCCCTTCAAGCTCTAGATGGGAAGGTAATGGCGACTTTCTTCCACTACTTAAACATCTATTTTCCTTTTGGATCTTTGATTATTATTTTGAATCTTTGA 390 0.4026 MAFLSKVGNILRQTVNRQFNSEVRSTSIFASIRCMSTSTSSKLFIGGLSYGIDEASLRQEFAKYGEVMEARIIHDRETGRSRGFGFVTFTNAEEASSALQALDGKVMATFFHYLNIYFPFGSLIIILNL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01310 129 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 107 IPR000504 GO:0003723
Pte17g01310 129 CDD RRM2_NsCP33_like 42 107 - -
Pte17g01310 129 SUPERFAMILY RNA-binding domain, RBD 38 109 IPR035979 GO:0003676
Pte17g01310 129 Gene3D - 2 109 IPR012677 -
Pte17g01310 129 SMART rrm1_1 42 117 IPR000504 GO:0003723
Pte17g01310 129 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 107 IPR000504 GO:0003723
Pte17g01310 129 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 28 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01310 Pte-Chr17 27939985 27940569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01310 41 107 Eukaryotic Initiation Factors Gene Family AT3G16380 31.343 1.30e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01310 K12741 - tcc:18604838 147.902