Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01285 ATGGGAAGAGGGAGAGTAGAGTTGAAGAGGATTGAGAACAAGATCAACAGGCAGGTGACCTTTGCTAAGCGAAGGAACGGGCTTTTGAAGAAAGCATATGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACTCTGGAAAGGTACCAGAAAAGCAATTATGGAGCACCTGAGACCAACATTTCTACAAGGGAGGCCTTGGAGCTGAGCAGCCAACAGGAATATTTGAAACTCAAGGCACGTTATGAAGCCTTACAACGATCTCAAAGGAATCTTCTTGGAGAAGACCTTGGTCCCTTGAGCAGCAAAGAGCTCGAGTCACTGGAAAGGCTTCTAGATATGTCCCTGAAGCAGATAAGATCAACAAGGACACAATATATGCTTGATCAACTATCTGATCTTCAACGTAAGGAACACCTGCTTACTGAAGCCAATAAGACACTGAAAGAAAGGTTGATGGAAGGATACCAAGTGAGTTCACTCGCTCTTAATCAAAGTGCTGAAGATATCGTGTACAGCCAGCAGGCTGCTCAAACTCATGGTGACGTCTTCTTCCATCCTCTGGAGTGTGAGCCAAGGTTACAAATTGGATCATATCAGCCAGATCCAATAACTGCTGGGGCTGCTGGTCCAAGCGTGAGTAGTAACTACATGCCAGGATGGTTAGCATGCTAA 738 0.4539 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKSNYGAPETNISTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERLLDMSLKQIRSTRTQYMLDQLSDLQRKEHLLTEANKTLKERLMEGYQVSSLALNQSAEDIVYSQQAAQTHGDVFFHPLECEPRLQIGSYQPDPITAGAAGPSVSSNYMPGWLAC* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01285 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pte17g01285 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01285 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pte17g01285 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pte17g01285 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte17g01285 245 Coils Coil 152 172 - -
Pte17g01285 245 FunFam MADS-box transcription factor 7 13 98 - -
Pte17g01285 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte17g01285 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte17g01285 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte17g01285 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte17g01285 245 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g01285 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte17g01285 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte17g01285 245 Coils Coil 126 146 - -
Pte17g01285 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01285 Pte-Chr17 27634403 27641076 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01285 1 243 MADS-box Gene Family AT1G24260 71.371 9.28e-110 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte17g01285 K-box 3.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01285 - - csv:101216798 412.149