Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01271 ATGGCTTGTCCTCCATTTCAGTGGGATTGGGAACAACTCTTTATGCTAAATGGAAAATCAACTGAAAACTCAAAGTTACAAACAATGGACTGGTTTGGTGAGGTGGACAGAGTTATTAATGCTGGGTCCTTCTATCTGTCCTGGGGCGGTGCTGACTCTGGATCTGATCACGTCCAAACATCAAAGAGCTCAAAATCAGCGTCCTCAATTGGCGAAATTAAAACTTCAAAGTTCACCTTTGAAAGTATACAAGAAGATTCTAGTGTTAAGGAAGATGTGTCTAAGAATGAACTGAATGAAAGTTCTCCAACACTTGAGCCATCCAGCTCTGGCGAGCCTGTGCTCAGTCTAAAGCTTGGAAAACGGTTTTGTTTTGAGGATGTTTGCCCAGAAAAAGATTTCAAATTCACTTTTTTCACTGACATTCGTATTTCAACCTCAAGTACAGCAAAGAAATGCAGGTCAAATATCAGGAGCAACCAACCACCGTGCTGCCAGGTGAAAGGCTGCAATCTCGACCTGTCTTCTGTTAAAGACTCTCATCGAAAACACAAAGTTTGTGAAAGTCATTCCAAGTCACCTAAAGTAGTTGTGTCTGGTTTGGAAAGACGGTTTTGCCAGCAGTGTAGCAGGTACGCATCTGTGTGA 648 0.4228 MACPPFQWDWEQLFMLNGKSTENSKLQTMDWFGEVDRVINAGSFYLSWGGADSGSDHVQTSKSSKSASSIGEIKTSKFTFESIQEDSSVKEDVSKNELNESSPTLEPSSSGEPVLSLKLGKRFCFEDVCPEKDFKFTFFTDIRISTSSTAKKCRSNIRSNQPPCCQVKGCNLDLSSVKDSHRKHKVCESHSKSPKVVVSGLERRFCQQCSRYASV* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01271 215 Gene3D - 161 215 IPR036893 GO:0003677|GO:0005634
Pte17g01271 215 MobiDBLite consensus disorder prediction 90 113 - -
Pte17g01271 215 Pfam SBP domain 165 213 IPR004333 GO:0003677
Pte17g01271 215 ProSiteProfiles Zinc finger SBP-type profile. 162 215 IPR004333 GO:0003677
Pte17g01271 215 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 211 IPR044817 GO:0003677
Pte17g01271 215 SUPERFAMILY SBT domain 163 213 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01271 Pte-Chr17 27547705 27550035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01271 2 212 SBP-box Gene Family AT5G43270 44.292 1.47e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte17g01271 SBP 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01271 - - qsa:O6P43_030604 244.202