Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01258 ATGGCGGAAGATGAAGGCAACGCAGATCGGATCAGACCGGAATTTCCGAACGGTCGAATCAAGAAAATCATGAAGCTCGATAAAGACATCAATAAGGTGAACTCAGAGGCTCTCTTTCTGGTTTCCTGCTCCTCCGAGCTCTTCCTCCGATTCCTGGCCGAGAAATCTGCCTCGGTTGCGGTTGAGAAGAAAAGGAAGACAGTGAAGCTGGAACATCTGAGAGTCGCTGTGAAGAGGCACCGTCCGACTAGTGATTTTCTTCTCGAAGAGCTTCCTCCTCCGACCAAAACCTCCAAAGGTACGGCCACCGATAGCAAGCAACCTCGCACTGTTGATGATAAGCCTCTACCAGCCGGTACGCAACGCATCGATCAATTTTTCCGTAAGCCTGATACCACCGCTCCTATACAGATCGATGAAGCTTAA 426 0.5 MAEDEGNADRIRPEFPNGRIKKIMKLDKDINKVNSEALFLVSCSSELFLRFLAEKSASVAVEKKRKTVKLEHLRVAVKRHRPTSDFLLEELPPPTKTSKGTATDSKQPRTVDDKPLPAGTQRIDQFFRKPDTTAPIQIDEA* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01258 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 77 IPR003958 -
Pte17g01258 141 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 96 - -
Pte17g01258 141 MobiDBLite consensus disorder prediction 84 141 - -
Pte17g01258 141 FunFam Nuclear factor Y, subunit C13 1 92 - -
Pte17g01258 141 SUPERFAMILY Histone-fold 6 89 IPR009072 GO:0046982
Pte17g01258 141 Gene3D Histone, subunit A 2 92 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01258 Pte-Chr17 27451731 27452511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01258 1 129 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.879 2.58e-50 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pte17g01258 CBFD_NFYB_HMF 3.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01258 - - cave:132179715 194.897