Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01253 ATGCACACACCCATACTCACTGCTGTAAAGGTCAGCTATCTTCGTCAACTCCTACGTCAGGAGGAGGAGAATCCGGAAACCGCCGCTGTCGCCGCCATGGTGAAGTACTCCAGAGAACCGGACAACCCTACTAAGTCATGCAAGGCCAGAGGCTCAGACCTCAGGGTCCATTTCAAGAACACCCGGGAGACAGCATTCTCCATCAGGAAGTTACCCTTAGCCAAGGCCAAGAGATACCTAGAGGATGTCATGGCTCACAAGCAAGCCATTCCATTCCGTCGTTTCTGTGGTGGTGTTGGCAGGACAGCTCAGGCAAAGAACAGGCATTCTAATGGACAAGGTCGTTGGCCAGTCAAATCTGCAAAGTTCATCTTGGATTTGCTCAAGAATGCTGAAAGTAACGCAGAGGTAAAGGGTTTGGATGTGGATGCTCTATTCATCTCCCACATTCAGGTTAATCAAGCACAGAAACAAAGGCGGCGCACCTATCGTGCCCATGGGAGAATTAACCCTTACATGTCCTCTCCCTGCCACATAGAGCTGATTCTTTCTGAGAAGGAAGACCCTGTCAAGAAGGAGCCTGATACTCAGCTGGCAACTAGTAAACGCTAG 612 0.5016 MHTPILTAVKVSYLRQLLRQEEENPETAAVAAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFSIRKLPLAKAKRYLEDVMAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALFISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEDPVKKEPDTQLATSKR* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01253 203 Gene3D Ribosomal protein L22/L17 33 203 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pte17g01253 203 SUPERFAMILY Ribosomal protein L22 33 186 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pte17g01253 203 ProSitePatterns Ribosomal protein L22 signature. 159 183 IPR018260 GO:0003735|GO:0005840|GO:0006412
Pte17g01253 203 Pfam Ribosomal protein L22p/L17e 49 184 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pte17g01253 203 FunFam 60S ribosomal protein L17 33 203 - -
Pte17g01253 203 CDD Ribosomal_L22 47 183 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pte17g01253 203 Hamap 50S ribosomal protein L22 [rplV]. 32 186 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pte17g01253 203 NCBIfam 50S ribosomal protein L22 36 186 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pte17g01253 203 PANTHER 60S RIBOSOMAL PROTEIN L17 33 202 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01253 Pte-Chr17 27407233 27409709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01253 33 199 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.419 1.24e-114 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01253 K02880 - cpap:110825807 340.502