Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01247 ATGATGGATGTTGCCGAGGTTGAAGAAAGTTTGTTTGCAGCCAGTGATGCCAAGTTACATGGAGAAATGTGCAAGACTCTCTCCACCGTATATTCCAAAATATTGTCAATTTTTCCAACCCTGGAAGAAGCACGTCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCTCTGCATGTTGCACTCGAGAAGTCCAAGAATGTTCTTCAGCATTGTTCAGAATGTAGTAAACTGTACCTGGCAATAACAGGTGATTCTGTTGTTCTAAAATTTGAGAAGGCTAAATCTGCTCTTAAAGATAGTCTTCAACGCGTGGAGGATATTGTTCCACAATCTATCGGTTCTCAGATTGAAGAAATTATTAGTGAGCTTGAGGGTTTGGTGTTCACACTTGACCCTCTAGAGAAGCAAATTGGTGATGATTTAATTGGGCTACTGCAGCAGGGAAGAAAATTTAACGAGTCCAGTGACAGTAGTGAGCTGGAGTCTTTTCACCAGGCTGCTACTAAACTTGGAATTACATCCTCCAGAACTGCCCTTGCTGAAAGAAGAGCTCTGAAGAAACTCATAGAAAGAGCTCGTTCAGAGGAAGATAAGAGAAAAGAATCAATTGTTGCATACCTTTTACATCTCATGAGGAAGTACTCAAAGTTATTTAGAAGTGAAGTCTCGGATGACAATGATTCACAAGGTTCTTCACCTTGTTCTCCTACTGTTAAGGAAACTCTTGAAGATATTACTGCTGGCATCCATTGTCACGCCTTTGATAGACAGCTTTCAAAACTAGGTTCCTTCAATTTTAAGTCGAACAACAGAAGATCAGGGCAGATCCCCCATCCACCTGAGGAATTGAAGTGTCCAATATCCCTGCAACTTATGTATGATCCTGTCATCATTGCTTCAGGGCAGACATATGAAAGGATTTGCATAGAGAAGTGGTTCAGCGATGGGCATAACACCTGCCCAAAGACTCAACAGCAGCTCCCACATCTTTCATTGACTCCTAATTACTGTGTTAAAGGGCTTGTTGCTAGTTGGTGTGAACATCATGGTGTTCCCGTTCCTGATGGTCCCCCAGAGTCCCTTGATATGAACTATTGGAGGTTGGCAATGTCAGAGTCGGAGTCCACGAAATCCAGATCGGTGGGCAGTGTTAATTCTGGCAAGTTGAAGGGTGTCAAGGTGGTTCCCTTGGAGGAAAATGGCATCATGGAGGAAGCTGAAGGAAATGAACCCCACAATGTATCTGAACATGAGGAGATATCTGAGGATCTCGAAAATTGTCTAACAGTATTGAATGAAGAGAATGACATGAAGAAGCAATGCAGGGTAGTTGAAAAAATAAGATTCTTGCTGAAAGATAATGAAGAAGCCAGAATCTATATGGGGGCCAATGGATTTGTTGAAGCACTTCTACAATTTCTGCAGTCAGCTGTGCATAAAGGGGATGCAGTGGCTCAAGAAAGTGGAGCAATCGCCCTTTTTAACCTAGCAGTCAACAATAATAGGAACAAGGAAATTATGTTGGAAGCTGGAGTTATATCGTTGTTGGAGGAAATGATTTGCGACTCCAGGTCCCATGGATGTGCGACTGCCCTATTTCTGAATATATCCTGCCTTGGAAAGGCCAAGCCTATAATTGGCTCTAGCCCTGCTGTTCCGTTTCTAATTCAGCTTCTTACTGCCGCAACTGAACCCCTGTGCAAGCTGGATGCGCTCCATACACTTTATAATCTATCTACATATCCCTCCAATATCCCACCCCTCCTATCAGCTGGTATCACTCGGGCCCTTCAACCACTTCTTGCTGACCCTGGAGAAAGTACTTGGACTGAGAAGTGCCTTGCTGTTTTAATAAATTTGGCTTCTTGCCAACTAGGGAGAGAGGAAATGATCTCAACGGATGGTCTCATAAGTTGCCTCGCCGCGATATTGGACATTGGTGAACCAGTAGAGCAGGAACAAGCTGTCTCATGTCTCTTAATTTTGTGTAACAGGAATGAGGATTGTTGTCAGATGGTCCTGCAAGAAGGGGTAATACCGGCTTTGGTGTCTATCTCAGCTAATGGAACCTCGAGGGGAAGAGAAAAGTCCCAGAAACTCTTAATGTTGTTCCGGGAGCAAAGACAACAAGAACACTCGCCCGTTGAGAAAAACCAACAGACAGCCGAAGCTACTGGCATACCAATGCATGCTCCAGATGCGAAGCCTATGTGCAAATCAATGTCAAAAAGAAAGATGGGAAAAGCTTTTAGCTTTTTGTGGAAAAGCAGGAGTTATTCCGTTTACCAATGCTAG 2298 0.4343 MMDVAEVEESLFAASDAKLHGEMCKTLSTVYSKILSIFPTLEEARPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDSVVLKFEKAKSALKDSLQRVEDIVPQSIGSQIEEIISELEGLVFTLDPLEKQIGDDLIGLLQQGRKFNESSDSSELESFHQAATKLGITSSRTALAERRALKKLIERARSEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSSPCSPTVKETLEDITAGIHCHAFDRQLSKLGSFNFKSNNRRSGQIPHPPEELKCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTQQQLPHLSLTPNYCVKGLVASWCEHHGVPVPDGPPESLDMNYWRLAMSESESTKSRSVGSVNSGKLKGVKVVPLEENGIMEEAEGNEPHNVSEHEEISEDLENCLTVLNEENDMKKQCRVVEKIRFLLKDNEEARIYMGANGFVEALLQFLQSAVHKGDAVAQESGAIALFNLAVNNNRNKEIMLEAGVISLLEEMICDSRSHGCATALFLNISCLGKAKPIIGSSPAVPFLIQLLTAATEPLCKLDALHTLYNLSTYPSNIPPLLSAGITRALQPLLADPGESTWTEKCLAVLINLASCQLGREEMISTDGLISCLAAILDIGEPVEQEQAVSCLLILCNRNEDCCQMVLQEGVIPALVSISANGTSRGREKSQKLLMLFREQRQQEHSPVEKNQQTAEATGIPMHAPDAKPMCKSMSKRKMGKAFSFLWKSRSYSVYQC* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01247 765 PANTHER U BOX DOMAIN-CONTAINING 24 708 - -
Pte17g01247 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Pte17g01247 765 MobiDBLite consensus disorder prediction 710 734 - -
Pte17g01247 765 Coils Coil 415 435 - -
Pte17g01247 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Pte17g01247 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Pte17g01247 765 SUPERFAMILY ARM repeat 424 698 IPR016024 -
Pte17g01247 765 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Pte17g01247 765 Coils Coil 176 196 - -
Pte17g01247 765 SUPERFAMILY RING/U-box 271 356 - -
Pte17g01247 765 SMART arm_5 540 581 IPR000225 GO:0005515
Pte17g01247 765 SMART arm_5 582 623 IPR000225 GO:0005515
Pte17g01247 765 SMART arm_5 455 499 IPR000225 GO:0005515
Pte17g01247 765 SMART arm_5 501 539 IPR000225 GO:0005515
Pte17g01247 765 SMART arm_5 624 665 IPR000225 GO:0005515
Pte17g01247 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Pte17g01247 765 Gene3D - 537 707 IPR011989 -
Pte17g01247 765 CDD RING-Ubox_PUB 281 333 IPR045210 -
Pte17g01247 765 Gene3D - 414 535 IPR011989 -
Pte17g01247 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01247 Pte-Chr17 27369001 27372933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01247 2 764 U-box Gene Family AT1G24330 66.838 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01247 - - mnt:21388925 1115.52