Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01236 ATGTCAACTTCGCCTTCTCCGGGAGCTGCTCCAGCTCCCACATCACCACCGGCGCCCCCTGCCGACAGTACGGCACCTCCTCCGTCAACAACAACTCCGCCTTCGGTGGCTCCGTCTTCGCCACCTCCGTCGAATCCGTCTCCGCCTTCTCCTTCATCTTCTTCTCCGGCCCCTACAGTTCCAGATACTCCTTCAGCTCCTCCACCTACGAATGCTATATCTCCTTCTCCACCTGCGTCCACCCCACCTTCTACCACTCCATCTACGCCGTCGGTTCCGTCACCGGTGCTGCCATCCACTCCGAACACTCCCCCCGCGCCTGCTGGTCGAGGATCACCACCGCCTCCCAGTTCGAAAACGCCTTCTACTCCCAGTCGTGGTTCCCCATCACCCCCTTCGCCTTCTTCCAAGTCGTCTTCTTCGTCGGGTGTGTCTATTGGGCTTGTGGTGGGAGTCGCGGTGGGTGCAGTTGCGATACTATTGGTGCTTAGTATTGTCTGCATTTGCTGTAGAAAGAAGAGGAGAAGACGCGATGAGGAGTACTACATGCCTCCGCCACCACCTGTGGGTGCTGGACGTAAAGATGACCGTTATAGCGGTGCGCCTCAGCATTGGCAACAAAGTGCTAACCCTCCTTCAGATCATGTTGTGATGATGCCACCAAAGCCATCTCCTCCGTCCTACTCTCCTTTGTATGCTCCTAAGCCTCCTCCTCTTCCTTCACCAGCACCAGCACCAGCATCAGCACCAACATCATTACCTTACCTAAACAGCAGTGGAGGTTCTGGCACAAATTATTCAGGATCTGAAACTCCTTTACCACCTCCCTCTCCTGGCATTGCCCTGGGTTTCTCAAAGAGCACATTCACATATGACGAATTGGCTAGGGCAACAGATGGATTTTCTGATGCCAACCTCTTAGGTAGTGGTGGCTTTGGGCATGTGCACCGAGGAATTCTGCCAAATGGTAAGGAAGTAGCTGTCAAGCAGCTGAAGTCTGGGAGCGGGCAGGGTGAGCGTGAATTTCAGGCTGAAGTCGAGATTATTAGTCGAGTGCATCACAAACATCTCGTCTCGTTGGTGGGTTACTGTATGACTGGAACTAAGAGGCTTCTTGTATATGAGTTTGTTCCAAACAACACTTTGGAGTTCCATTTACATGGAAAGGGAAGACCAGTTTTGGAATGGCCTACAAGACTGAAAATTGCTTTAGGATCTGCAAAAGGATTAGCATATCTTCATGAGGATTGCCATCCCAAAATTATTCACCGAGATATCAAGGCTGCGAACATACTTCTGGATTTCAAGTTTGATGCTATGGTTGCAGATTTTGGACTGGCTAGGATTTCTTCTGATTTCAATACACATGTCTCTACTCGTGTAATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCTTCAAGTGGGAAACTTACAGACAAGTCAGATGTGTTCTCCTTTGGGGTTGTGCTTCTGGAATTGATTACTGGTCGCCGTCCTGTTGATTCAAGTAATACTTTCATGGACGACAGTTTGGTGGACTGGGCAAGGCCATTGCTCACCCAAGCTTTAGAAGATCGAAATTTGGATGCTTTAGTGGATCCAAAGCTGCAACATGACTATGACCACAATGAGATGGGTAGGATGGTGGCCTGTGCAGCAGCTTGTGTAAGACATTCAGCACGACGTCGACCACGGATGAGCCAGGTGGTTCGGGCTTTGGAAGGAGATGTTTCTCTGGCTGATCTAAACGAAGGAATTACACCTGGTCACAGTAGTGTTTATAGTTCTCATGGAAGCTCCGACTATGACACATCACAATACAAGGAAGACATGAAAAGGTTTAGAAAAATGGCGCTAGGAAGCCAAGGGTATGGTGCAAGTAGCGAGTACAGTGGCCCAACCAGTGAGTATGGGTTGTATCCTTCCGGTTCCAGCAGTGAAGGACAAACCACAAGGGAAATGGACATGAGGAAGATGAAAAACAGTGAAGGTTTCAGCGCAAGCAGCCAAAAAAACACCGGAGACATGGAACTCGGAAGAATGAAAAATAGTCAAGGTTTCAGTGGAACTTCTTGA 2079 0.4964 MSTSPSPGAAPAPTSPPAPPADSTAPPPSTTTPPSVAPSSPPPSNPSPPSPSSSSPAPTVPDTPSAPPPTNAISPSPPASTPPSTTPSTPSVPSPVLPSTPNTPPAPAGRGSPPPPSSKTPSTPSRGSPSPPSPSSKSSSSSGVSIGLVVGVAVGAVAILLVLSIVCICCRKKRRRRDEEYYMPPPPPVGAGRKDDRYSGAPQHWQQSANPPSDHVVMMPPKPSPPSYSPLYAPKPPPLPSPAPAPASAPTSLPYLNSSGGSGTNYSGSETPLPPPSPGIALGFSKSTFTYDELARATDGFSDANLLGSGGFGHVHRGILPNGKEVAVKQLKSGSGQGEREFQAEVEIISRVHHKHLVSLVGYCMTGTKRLLVYEFVPNNTLEFHLHGKGRPVLEWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFDAMVADFGLARISSDFNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVVLLELITGRRPVDSSNTFMDDSLVDWARPLLTQALEDRNLDALVDPKLQHDYDHNEMGRMVACAAACVRHSARRRPRMSQVVRALEGDVSLADLNEGITPGHSSVYSSHGSSDYDTSQYKEDMKRFRKMALGSQGYGASSEYSGPTSEYGLYPSGSSSEGQTTREMDMRKMKNSEGFSASSQKNTGDMELGRMKNSQGFSGTS* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01236 692 MobiDBLite consensus disorder prediction 1 143 - -
Pte17g01236 692 Gene3D Phosphorylase Kinase; domain 1 283 376 - -
Pte17g01236 692 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Pte17g01236 692 Gene3D Transferase(Phosphotransferase) domain 1 377 584 - -
Pte17g01236 692 MobiDBLite consensus disorder prediction 251 270 - -
Pte17g01236 692 MobiDBLite consensus disorder prediction 623 692 - -
Pte17g01236 692 FunFam proline-rich receptor-like protein kinase PERK1 279 376 - -
Pte17g01236 692 CDD STKc_IRAK 307 576 - -
Pte17g01236 692 MobiDBLite consensus disorder prediction 9 131 - -
Pte17g01236 692 Pfam Protein tyrosine and serine/threonine kinase 306 574 IPR001245 GO:0004672|GO:0006468
Pte17g01236 692 SUPERFAMILY Protein kinase-like (PK-like) 277 574 IPR011009 -
Pte17g01236 692 ProSiteProfiles Protein kinase domain profile. 301 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g01236 692 SMART serkin_6 301 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g01236 692 MobiDBLite consensus disorder prediction 216 249 - -
Pte17g01236 692 MobiDBLite consensus disorder prediction 663 692 - -
Pte17g01236 692 FunFam Proline-rich receptor-like protein kinase PERK1 377 585 - -
Pte17g01236 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Pte17g01236 692 MobiDBLite consensus disorder prediction 179 279 - -
Pte17g01236 692 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 155 643 IPR047117 -
Pte17g01236 692 MobiDBLite consensus disorder prediction 625 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01236 Pte-Chr17 27265061 27269530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01236 122 636 Trihelix Transcription Factor Family AT1G70460 49.809 1.72e-163 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pte17g01236 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01236 - - qsa:O6P43_007923 808.905