Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01218 ATGAACAGTGCTTTTTCTTCTACTAGGCATGATGTGTTTCCTGCTGGTCTGCGCGTTCTTGTCGTAGATGATGATTCTGCATGGTTGAGAATACTTGAAAAGATGCTCAAGAAATGCAAATATGAAGTGACTACATGTTGTTCTGCAACAAATGCACTGAACTTGCTCCGTGAGAAAAAGGATGGTTACGACATTGTGATCAGCGACGTCAACATGCCTGATATGGATGGCTTCAAGCTTCTAGAGCACGTTGGACTTGAGATGGACCTTCCTGTCATCATGATGTCGGTTGATGGAGAAACTAGCAGGGTAATGAAAGGCGTGCAGCATGGAGCGTGTGATTATCTCCTTAAACCTATTAGCATGAAAGAACTAAAAAACATATGGCTGCATGTTTTCAGAAAGAAGGTTCATGAAATTAGGGAAATTGAAAGTCAAGAAGGCTCAGATGGAAGCTTTGAAGCCTTTATAAGAAGAAATGGACTGGATCAATCTGATGACTGCCACTTGTTTAGTGGAGATGACATGAGTCCAGCGAAGAAAAGAAAGGTTTTAGATGAGAAAGACTTCGGGGACTCTTCTTCCACAAAAAAAGCTCGGGTCGTTTGGTCTGTGGATCTTCATCAGAAATTTGTTAAAGCTGTGAATCAGATTGGTTTTGACAAAGTTGGTCCCAAGAAAATACTTGATTCGATGAATGTTCCATGGTTGACAAGAGAAAATGTTGCTAGCCACTTGCAGAAGTATCGTCTCTACTTGAGTAGGCTGCAGAAGGACAATGATCAGAAATCGTCCTTTACTGGGGTTAAGCAAGATTCGCAGTCAAAAGATCCTCCTGGAAGTATGGATGTCAAGAAAGCAATGAACGTGGATCAAAATGAAGTTCACATACATGGTTACCCATACTCTGGCTGCAGCTTCAAAAGTCACAACGACAATAGTCCAAGCCATGAACACAATGTTGAGGGAGTTTCTTCAGAGTCATTGAAAGAACCAAAAATATCTCGAATTAGAAACAATCTTGAGTCCCGTGTAAGAAGGACTTGTTCAAGGGGACTCAATCATTCGTTGTCGACTCAAGAATCTGAAACAAGATTTGAGACTTTGGATCGTACCTTGCCAGCACTTAACTCTTGGAATGAAGCTCCAAGGGTCCAACTGAAACAGGAGGACAAGCCACGGCATTTTGAGGACAGGTATAGTCATTTACCTTTGGGTGGAAAGCAGCATCACATTCGAGTCAATGTACCTCAAGTTCCATCCATGAACTCTACTCCCAGTAGAAGAGATACAGAACTTGTTGGCTCTATTGATGCCAAACCTTTGCATGTCAATTTCAAGAATGATCAGCTCAGTTGTTTGAGTTCAATTGACATGTCAAATCAGGAGCTCCATGGACAGCTTTCTTCTTCTGCTGCTGCTACTGCTTTGGGTGGGAAGACACAAGGTTTTGATTTGAGTTCCATATCTGATATGGAATATTACCAAGGAAGCCTACTTCTGGGTGATGAGGCAATTTCAATGCCTCTGGACGACGAGTTGCAGTATTCATTGCTATATGGTAGCCTGAATACAATGAATTATGGACTCCAGAACATAGAGTTGTCCGAGTACTATGATCCAGGGCTCATTGCTGAAGTCCCAATCTACTTCTATGATACATTGAGGTTTGAAAATTGCTATTCCCATGATCCAGCAGAGTACTCCTTGATAGATCGTGGTTTATAG 1728 0.4184 MNSAFSSTRHDVFPAGLRVLVVDDDSAWLRILEKMLKKCKYEVTTCCSATNALNLLREKKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPISMKELKNIWLHVFRKKVHEIREIESQEGSDGSFEAFIRRNGLDQSDDCHLFSGDDMSPAKKRKVLDEKDFGDSSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDSMNVPWLTRENVASHLQKYRLYLSRLQKDNDQKSSFTGVKQDSQSKDPPGSMDVKKAMNVDQNEVHIHGYPYSGCSFKSHNDNSPSHEHNVEGVSSESLKEPKISRIRNNLESRVRRTCSRGLNHSLSTQESETRFETLDRTLPALNSWNEAPRVQLKQEDKPRHFEDRYSHLPLGGKQHHIRVNVPQVPSMNSTPSRRDTELVGSIDAKPLHVNFKNDQLSCLSSIDMSNQELHGQLSSSAAATALGGKTQGFDLSSISDMEYYQGSLLLGDEAISMPLDDELQYSLLYGSLNTMNYGLQNIELSEYYDPGLIAEVPIYFYDTLRFENCYSHDPAEYSLIDRGL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01218 575 FunFam Two-component response regulator 194 257 - -
Pte17g01218 575 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160
Pte17g01218 575 MobiDBLite consensus disorder prediction 262 278 - -
Pte17g01218 575 SMART REC_2 17 129 IPR001789 GO:0000160
Pte17g01218 575 Gene3D - 194 257 - -
Pte17g01218 575 SUPERFAMILY CheY-like 16 138 IPR011006 -
Pte17g01218 575 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Pte17g01218 575 MobiDBLite consensus disorder prediction 310 330 - -
Pte17g01218 575 CDD REC_typeB_ARR-like 19 133 - -
Pte17g01218 575 MobiDBLite consensus disorder prediction 262 284 - -
Pte17g01218 575 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Pte17g01218 575 MobiDBLite consensus disorder prediction 312 330 - -
Pte17g01218 575 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Pte17g01218 575 Gene3D - 17 184 - -
Pte17g01218 575 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Pte17g01218 575 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 315 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01218 Pte-Chr17 27060294 27063663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01218 11 264 Response Regulator Gene Family AT2G25180 53.232 1.85e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte17g01218 Response_reg 5.9e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01218 K14491 - qsa:O6P43_023917 651.744