Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte17g01217 | ATGTGGCAAAAACAGTACAGCCAATCTTCTCACAGAGATTCCATTCAAACTCTTGAAGCCGACATCCATCATGCGAATGCCCTGGCTGCAGCTCTCCCAAGAGAATATGGTGGGGGTAACTATTTCGAGATGAGGCTATCTTACAGCCCATTTGCTCATTTTTTCTTGTATTGGATCGAATGGTTGGACATCAGTTGCACAGATACTCTTGCGAGTTTTTTAGGCTTACTTCACATACTTATACACAAGGTTTATGTTGATGGAATGCCATCCATGTCCTCGAAAGAAAGGAAGGCCACTGTAAAAGAGTTCTATGCTGTGATATATCCTTTACTGAAGCAACTTGAAAGTGAATTACGCTATATGGATCAGAATCTTCAAGCTGGCACGAAAGGTTTTGGCAGAAATAGGTTTGAGCGAAATTCCAGTAGGGATCAAGAGAGAGATGGTGAATGTGGCATATGCATGGAAAACAATACCAAGATGTTACTGCCAAATTGTGGCCATTCTATGTGTATCACTTGCTTCCATGACTGGAATTCAAGATCAGAATCCTGCCCTTTCTGCCGTGGAAATCTCAAGAGAGTTGCATCTACAGACTTATGGGTTGTTGTAAACAAAGATGAAGTGATTGACACCGATACTCTAGCCAAGGATAATTTCGACCGTTTCTATGATTACATGGAAACCCTGCCTCTCATCGTGACAGATAGAAATCTATCTCTTTACGATTACATACTTTGA | 744 | 0.4126 | MWQKQYSQSSHRDSIQTLEADIHHANALAAALPREYGGGNYFEMRLSYSPFAHFFLYWIEWLDISCTDTLASFLGLLHILIHKVYVDGMPSMSSKERKATVKEFYAVIYPLLKQLESELRYMDQNLQAGTKGFGRNRFERNSSRDQERDGECGICMENNTKMLLPNCGHSMCITCFHDWNSRSESCPFCRGNLKRVASTDLWVVVNKDEVIDTDTLAKDNFDRFYDYMETLPLIVTDRNLSLYDYIL* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte17g01217 | 247 | PANTHER | RING FINGER PROTEIN 41, 151 | 10 | 241 | - | - | |
| Pte17g01217 | 247 | SMART | ring_2 | 152 | 189 | IPR001841 | - | |
| Pte17g01217 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 201 | IPR013083 | - | |
| Pte17g01217 | 247 | Pfam | Zinc finger, C3HC4 type (RING finger) | 149 | 195 | - | - | |
| Pte17g01217 | 247 | SUPERFAMILY | RING/U-box | 151 | 196 | - | - | |
| Pte17g01217 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 152 | 190 | IPR001841 | - | |
| Pte17g01217 | 247 | FunFam | RING/U-box superfamily protein | 134 | 199 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte17g01217 | Pte-Chr17 | 27053644 | 27056868 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte17g01217 | 151 | 211 | Rapid Response to Elicitors | AT3G16720 | 29.231 | 3.71e-06 | 45.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte17g01217 | - | - | pper:18793302 | 319.701 |