Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte17g01216 | ATGGAAACTATGTCATACCAACTTGTTGGGTCGTACCAAGACTCTCTCAAAGTACTGGAGGCTGATATACAGCATGCCAATGATTTGGCTGCTGCACTTCCTACAAGCAATGGTGGAACGATTTTTCAATTGAAATTGGTTTACAATCACTGGGCTCCGCTCGTTCTATATTTGCTGCAATGGCTGGACTGTTCTTGCACATGTCTGGTGCATCGATATCTCAGCCTCTTTCACATTCTTGTATACAAGGTGCACAAGGATGGAGGAAGATCGAATATTTCTACTCACGGAAGGAAGGCAACTATTGGGGACTTCTATTCTGTTATACTGCCATCTCTCCAACGGTTCCATGGCAGCTGGAAGGAATTTGAGAATGGAAAAGAAGGAAATTGTAGCATGGAAAGTTATGTGAAGAATGGAGAAGGGAGACTAGCCGGTGTTGACTTGGAAAGAGAGGACGAATGTGGGATTTGCTTGGAACCCTGCACTAAAGTGGTCTTGCCAAATTGCTGTCATGCTATGTGCATTAAATGCTATCGGAAATGGCATTCTAGATCGGAGTCTTGCCCCTTTTGTCGTGGGAGCATAAGGAGAGTTAATTCAGAAGATTTATGGGTGCTCACCTGTAGTGATGATGTTGTTGATGCTGAAACAGTGTCCAAGGAGGACTTATTACGGTTCCACCTCTATATCAACAGCCTACCAAAAGACTATCCAGATGCTCTTTTCTTAGTTTACTGTGAGTACCTCATATAA | 756 | 0.4339 | METMSYQLVGSYQDSLKVLEADIQHANDLAAALPTSNGGTIFQLKLVYNHWAPLVLYLLQWLDCSCTCLVHRYLSLFHILVYKVHKDGGRSNISTHGRKATIGDFYSVILPSLQRFHGSWKEFENGKEGNCSMESYVKNGEGRLAGVDLEREDECGICLEPCTKVVLPNCCHAMCIKCYRKWHSRSESCPFCRGSIRRVNSEDLWVLTCSDDVVDAETVSKEDLLRFHLYINSLPKDYPDALFLVYCEYLI* | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte17g01216 | 251 | SUPERFAMILY | RING/U-box | 148 | 198 | - | - | |
| Pte17g01216 | 251 | PANTHER | RING FINGER PROTEIN 41, 151 | 11 | 249 | - | - | |
| Pte17g01216 | 251 | SMART | ring_2 | 155 | 192 | IPR001841 | - | |
| Pte17g01216 | 251 | Pfam | Zinc finger, C3HC4 type (RING finger) | 152 | 199 | - | - | |
| Pte17g01216 | 251 | ProSitePatterns | Zinc finger RING-type signature. | 170 | 179 | IPR017907 | - | |
| Pte17g01216 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 203 | IPR013083 | - | |
| Pte17g01216 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 193 | IPR001841 | - | |
| Pte17g01216 | 251 | FunFam | RING/U-box superfamily protein | 136 | 202 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte17g01216 | Pte-Chr17 | 27049758 | 27051644 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte17g01216 | 111 | 202 | C3H Transcription Factor Family | AT5G47610 | 32.292 | 6.01e-06 | 43.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte17g01216 | - | - | cave:132177696 | 399.823 |