Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01209 ATGGATTGTACGCTACCCCTGTCCTTGCTTTCAATTCTATTGACTTCTGTTTTCCCTTATTTAAATTACGGGCATGCAGGGGCTGCTGCACTTCCTACAAGCAATGGTGGAACGATTTTTCAATTGAAATTGGTTTACAATCACTGGGCTCCGCTCGTTCTATATTTGCTGCAATGGCTGGACTGTTCTTGCACATGTCTGGTGCATCGATATCTCAGCCTCTTTCACATTCTTGTATACAAGGTGATTGCTAGCATTAAGATATCCATTGATTTTGGAATCCAACTTTATGAATCTGTTTTGCTGATTGCTCGTCTTACTAAAGCTGTTATACTGCCATCTCTCCAACGGTTCCATGGCAGCTGGAAGGAATTTGAGAATGGAAAAGAAGGAAATTGTAGCATGGAAAGTTATGTGAAGAATGGAGAAGGGAGACTAGCCGGTGTTGACTTGGAAAGAGAGGATGAATGTGGGATTTGCTTGGAACCCTGCACTAAAGTGGTCTTGCCAAATTGCTGTCATGCTATGTGCATTAAATGCTATCGGAAATGGCATTCTAGATCGGAGTCTTGCCCCTTTTGTCGTGGGAGCATAAGGAGAGTTAATTCAGAAGATTTATGGGTGCTCACCTGTAGTGATGATGTTGTTGATGCTGAAACAGTGTCCAAGGAGGACTTATTACGGTTCCACCTCTATATCAACAGCCTACCAAAAGACTATCCAGATGCTCTTTTCTTAGTTTACTGTGAGTACCTCATATAA 762 0.4213 MDCTLPLSLLSILLTSVFPYLNYGHAGAAALPTSNGGTIFQLKLVYNHWAPLVLYLLQWLDCSCTCLVHRYLSLFHILVYKVIASIKISIDFGIQLYESVLLIARLTKAVILPSLQRFHGSWKEFENGKEGNCSMESYVKNGEGRLAGVDLEREDECGICLEPCTKVVLPNCCHAMCIKCYRKWHSRSESCPFCRGSIRRVNSEDLWVLTCSDDVVDAETVSKEDLLRFHLYINSLPKDYPDALFLVYCEYLI* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01209 253 SMART ring_2 157 194 IPR001841 -
Pte17g01209 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Pte17g01209 253 SUPERFAMILY RING/U-box 150 200 - -
Pte17g01209 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Pte17g01209 253 PANTHER RING FINGER PROTEIN 41, 151 25 251 - -
Pte17g01209 253 FunFam RING/U-box superfamily protein 138 204 - -
Pte17g01209 253 Pfam Zinc finger, C3HC4 type (RING finger) 154 201 - -
Pte17g01209 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01209 Pte-Chr17 27009501 27010816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01209 113 204 C3H Transcription Factor Family AT5G47610 32.292 4.16e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01209 - - cave:132177696 319.701