Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01202 ATGCCTCCTCCGGTTCAGGATAAGCAAGTTTCCGATCTCCAGGTGACGAAACATGAGCCTGCAACAGTCTTTGCGTGGAAGCATTGGAATTGGAAGTCTGAGGGGGATATAATGTTAAATGGTGCCTTCTTCACACAGTCTGGGGACGTATCCTCCCGGAGCTATGCTAGGGCATGGAGCATGCCGGCAAAACCAGCTGTACTTGTGGAGCGTATGACAGCCGAAGCTGGAGCACTGAAGTGTAGAAAAGGCTTCCAATGCTGA 264 0.5114 MPPPVQDKQVSDLQVTKHEPATVFAWKHWNWKSEGDIMLNGAFFTQSGDVSSRSYARAWSMPAKPAVLVERMTAEAGALKCRKGFQC* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01202 87 SUPERFAMILY Pectin lyase-like 25 87 IPR011050 -
Pte17g01202 87 Gene3D - 5 80 IPR012334 -
Pte17g01202 87 PANTHER PECTATE LYASE 18-RELATED 13 84 IPR045032 GO:0030570
Pte17g01202 87 PRINTS Pollen allergen Amb family signature 29 53 IPR018082 -
Pte17g01202 87 PRINTS Pollen allergen Amb family signature 58 81 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01202 Pte-Chr17 26976167 26978772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01202 14 88 Polysaccharide Lyase AT4G13710 54.667 1.03e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01202 K01728 - qsu:112007041 102.834