Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01190 ATGGGTCTCTCACACTTTCCTTCTGCATCTGAAGGTGTACTCCCTGTGCTTGTGATGAACACAGTCCTTTCAGTGTCTCTGTTGAAAAACATGGTAAGATCCATGCTTTCAGCTATGGGTTCGACAGAAAGTGTGTCCAGTATCGAGGAAGATTTATATTATCCTGAGGATTCTTCAAGGGAGAGAAGAATCTCGATCACTCCATTCAAATCCTTTTGCAACAACAGGACAGCAGAGGCCGTCACCAACAGGAGTATTACTACAAGTTCTGGTGGTACAGGTGTCTGGGCTAAGACGGTAGAGTGTTGCGTGTGTCTTTGTGGGTTTGAAGCGGATGAGGAGGTGAGTGAATTATCATGCAAGCATTTCTTCCACAAAGGTTGTTTAGACAAGTGGTTCCATAACAAGCACATCACATGCCCTCTCTGCCGCTCGATTGAGTAG 444 0.455 MGLSHFPSASEGVLPVLVMNTVLSVSLLKNMVRSMLSAMGSTESVSSIEEDLYYPEDSSRERRISITPFKSFCNNRTAEAVTNRSITTSSGGTGVWAKTVECCVCLCGFEADEEVSELSCKHFFHKGCLDKWFHNKHITCPLCRSIE* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01190 147 SMART ring_2 102 143 IPR001841 -
Pte17g01190 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 146 IPR013083 -
Pte17g01190 147 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Pte17g01190 147 Pfam Ring finger domain 101 144 IPR001841 -
Pte17g01190 147 SUPERFAMILY RING/U-box 101 145 - -
Pte17g01190 147 PANTHER - 1 145 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01190 Pte-Chr17 26873232 26874338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01190 1 145 C3H Transcription Factor Family AT2G04240 38.095 7.67e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01190 K16285 - tcc:18609579 194.512