Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01186 ATGGATTTTCATCACCGGAAATTAAATCCTGTGAGTAAATGGAGGGGCATAGTTATGGCTTCTAAGCATGCCATCCAAGATATGGAGCAGTATCCACATCCAAGACCACCGTTTCCGCCGCTTCTACCGCTAAAGCAGGAAGAGGATATATCAAAGTCAATGCACCTGCTACATAAACTCATCATCGTAGCTTGCGCAGTGACTACAGCTTTAGTTATCTTCATCGTTTTGAATCGATTGAGGAAGTTAAAATCAAGGAGAAATAGTATCAGGCAAAGAAATCCATCAGTTATTTTTGCTGTACAAGAAGATCTTGTTCCTGAAGATCGTGAGCACGGCCCTGAACTAGATCATCCAATATGGTACATCCATTTTGTGGGGCTCCAACAATCTGTTATCGATTCTATTTCGGTATGTAAGTATAGGAATGACGATGGGTTGATAGAAGGAAAAGATTGTTCTATTTGCCTGTCTGAATTCGAAGAAAACGAGGATCTTCGTCTATTACCTAAGTGCAGTCATGCTTTTCACATCCCCTGCATCGACACGTGGTTGAGATCGCATAAAAACTGTCCTCTTTGCCGTGCTCCTATCATTCAGGATTCTTCAAACACGCAACCAGAAGTAGAAATAAGAGGTTCTAATTCGACTGATACCATTCCAATCCACGAGCCACAGTTGGAAGTTTTGGTACAGAGTGGTACGGAAGCTATTGAATCAAGAGTCAGAGGTGTTTCAAGTGCAGAAGCTGCAAGAGTTGACGAAATACCACTGACCAATTTTCCTGATTCTAACATGATGAGGTGTCATTCTCGAATTCTAAGTGATTTGGCTCATCGTGCTGTGGCGGTAGAAGATGAAGTACAACCCCTGAGGAGGTCAGTTTCCCTGGATGCGTCTTCTGCTTCAATGATATATAATGCCATGGCCAAGTTGAACGCTGATCAAGCAATTTCAGAGAATTTTTCAACGAGAGGAAGTAGAAATTTTAGTTCGGGTGGAAAAATTGCTGCAGTTGCTAAACGGGCTAGTAGAAGTTGGAGCATGTGTAAAATTAACTCAATGGGTCGTTCATTGCAGAAGGGGCCTCTCTCAATGAAAAGGTCTTTTTCATCTGGTAGAAAGTTCTTATCATCCAGACATTGCAGAAGCCAGAGCTCCTTTCTCCCATCGCCCATGTAA 1182 0.4239 MDFHHRKLNPVSKWRGIVMASKHAIQDMEQYPHPRPPFPPLLPLKQEEDISKSMHLLHKLIIVACAVTTALVIFIVLNRLRKLKSRRNSIRQRNPSVIFAVQEDLVPEDREHGPELDHPIWYIHFVGLQQSVIDSISVCKYRNDDGLIEGKDCSICLSEFEENEDLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPIIQDSSNTQPEVEIRGSNSTDTIPIHEPQLEVLVQSGTEAIESRVRGVSSAEAARVDEIPLTNFPDSNMMRCHSRILSDLAHRAVAVEDEVQPLRRSVSLDASSASMIYNAMAKLNADQAISENFSTRGSRNFSSGGKIAAVAKRASRSWSMCKINSMGRSLQKGPLSMKRSFSSGRKFLSSRHCRSQSSFLPSPM* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01186 393 Pfam Ring finger domain 152 195 IPR001841 -
Pte17g01186 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Pte17g01186 393 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 55 202 IPR044675 -
Pte17g01186 393 SMART FANCL_C_2 149 202 - -
Pte17g01186 393 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Pte17g01186 393 SMART ring_2 153 194 IPR001841 -
Pte17g01186 393 FunFam RING-H2 finger protein ATL54 128 201 - -
Pte17g01186 393 CDD RING-H2_EL5-like 152 195 - -
Pte17g01186 393 SUPERFAMILY RING/U-box 141 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01186 Pte-Chr17 26828280 26829461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01186 48 198 C3H Transcription Factor Family AT1G72220 44.805 4.90e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01186 - - jre:108989052 308.916