Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01185 ATGAAGAGACTTGGCAGCTCAGATTCCTTGGGTGGTCTAATGACCATTTGTCCATCAACAGACGAACGTAGCCCTGGAAACAACCATATGTATAGCAGAGATCAATTTCAGTCCATGTTGGACGGTTTAGATGAAGAAGGCTGTATCGAAGAGTCCGGCCATATTGGTGAGAAGAAACGTAGACTGAGCGTCACCCAAGTCAAGGCTTTGGAGAAAAACTTCGAGCTTGAAAATAAGCTTGAACCTGAGAGAAAAGTGAAGCTTGCCCAAGAATTAGGCCTGCAACCAAGACAAGTGGCTGTCTGGTTCCAAAACCGCAGGGCTAGATGGAAAACCAAACAATTAGAAAGAGACTATGGCGTTCTCAAAGCCAGCTATGAAGCCCTCAAACTCAACTTTGATACTCTCCAACATGATAATGATGCTCTGCGGAAAGAGATAAGAGAATTGAAATCAAAGCTTGAAGAGAACAACGCAGAAAGTGACATTTCAGTGAAGGAAGAGGTCACCAATCAAGACTCCGAAGACAAAGTTGCGGAACAGAGTAACCCAACTTTGGAGAGCCCCATTCTGAAATCAGAATCCAAGGATTTGAACCACGAGTTCTTCCACAGCAGCTGTGGGGTGGGAGCAAGCTCAGTCTTTGCATCTGACTTCAAAGACGGAGCTTCAGATAGCGACTCAAGTGCAATATTGAACGAAGATAACAGTCCAAACGCAACCATGTCTTCATATGAGATCCTTCAAAGTCACCAACGCCCGGTATCTCCATCACCGCTGTTCGCCGTCAACTGCTTTCAGTTCCACAAAGTTTACCAACCTCAATTTGTGAAGATGGAAGAGCACAATTTCTTTGGCGGTGACGACACCTGCGATTTCTTCTCGGAGGAACAAGCTCCTACCCTTCATTGGGACTGCTCAGATCAGTGGAATTGA 936 0.4551 MKRLGSSDSLGGLMTICPSTDERSPGNNHMYSRDQFQSMLDGLDEEGCIEESGHIGEKKRRLSVTQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKASYEALKLNFDTLQHDNDALRKEIRELKSKLEENNAESDISVKEEVTNQDSEDKVAEQSNPTLESPILKSESKDLNHEFFHSSCGVGASSVFASDFKDGASDSDSSAILNEDNSPNATMSSYEILQSHQRPVSPSPLFAVNCFQFHKVYQPQFVKMEEHNFFGGDDTCDFFSEEQAPTLHWDCSDQWN* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01185 311 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Pte17g01185 311 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Pte17g01185 311 SMART HOX_1 56 117 IPR001356 GO:0003677
Pte17g01185 311 MobiDBLite consensus disorder prediction 1 32 - -
Pte17g01185 311 MobiDBLite consensus disorder prediction 155 175 - -
Pte17g01185 311 MobiDBLite consensus disorder prediction 155 187 - -
Pte17g01185 311 Coils Coil 126 160 - -
Pte17g01185 311 CDD homeodomain 58 114 IPR001356 GO:0003677
Pte17g01185 311 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Pte17g01185 311 FunFam Homeobox-leucine zipper protein HAT5 51 115 - -
Pte17g01185 311 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Pte17g01185 311 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pte17g01185 311 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Pte17g01185 311 Gene3D - 54 120 - -
Pte17g01185 311 SUPERFAMILY Homeodomain-like 43 115 IPR009057 -
Pte17g01185 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 217 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01185 Pte-Chr17 26821301 26823910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01185 1 312 Homeobox Transcription Factor Family AT2G22430 48.961 5.10e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte17g01185 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01185 K09338 - qsa:O6P43_030496 444.121