Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01140 ATGAAGATGAGTTTGAGAGAGCGTGGCAGTATGGAGGATCCAGATGGAACTCTTGCAAGTGTTGCCCAATGCATAGAGCAACTGCGTCAGAGCTCTTCATCTGCTCAAGAGAAAGAATTTTCTTTAAAGCAGTTGTTGGAACTTATTGATAAGCGTGAAAATGCTTTCAGTGCTGTTGGAGCCCATTCTCAGGCTGTTCCAGTTCTTGTTTCTCTTCTCCGATCAGGATCACTGGCTGTGAAAATACAGGCTGCAACTGTATTAGGTTCTCTTTGTAAAGAAAATGAGCTGCGGCTGAAAGTCCTGCTTGGAGGATGTATACCACCATTGCTTGGTTTGCTCAAGTCCAGTTCAGCAGAAGGTCAAGTTGCTGCAGCTAAGACTATATATGCTGTATCTCAAGGTGGTGCCAGGGATCATGTAGGATCGAAAATATTCTCCACTGAAGGAGTTGTTCCAGTGCTTTGGGAGCAGTTAGAGAAAGGGTTGAAGAGCGGTAATGTTGTTGACAGCTTATTGACAGGAGCTCTGAAAAACCTCTCTACCAGTACTGAGGGATTCTGGAATTCAACAATACAAGCTGGGGGAGTGGATATCTTGGTGAAGTTGCTGACAGCTGGTCAGTCTGGCACGCTAGCAAATGTTTGCTTTCTTCTAGCTTGTATGATGATGGAGGATGACTCTATTTGTTCTAAGGTGTTGGCTGCAGAGGCAACTAAACAGCTCCTGAAACTATTAAACCCTGGTAACGATCCTGCTGTTAGAGCTGAAGCTGCAGGTGCTCTCAAATCTCTTTCTGCCCAGTGCAAGGAAGCGAGGCGAGAGATAGCTAACTCTAATGGCATTCCTGCATTGATAAATGCTACTATAGCACCTTCAAAAGAGTTTATGCAAGGTGAGTATGCTCAAGCATTGCAGGAGAATGCTATGTGTGCGCTGGCAAACATATCTGGGGGTTTGTCATATGTCATCTCAAGCCTTGGTCAGAGCCTTGAGTCATGTACTTCGCCAGCCCAAGTTGCAGACACACTAGGAGCTCTTGCTTCTGCCCTAATGATATATGATAGCAATGCAGAATCTATCAGAGCTTCAGATCCTCTGGCCATTGAGCAGACATTACTCAAGCAGTTCAAACCTCGCTTACCATTTCTTGTTCAAGAACGTACTATTGAAGCCCTAGCTAGTTTATATGGGAACACAATACTGTCAATCAAACTAGCGAACTCAGATGCAAAACGTTTGCTTGTTGGTCTAATAACAATGGCTTCAAATGAAGTACAAGATGAGCTAATGAAGGCTCTATTGACACTTTGCAATAATGAAGGGAGTCTTTGGCGTGCACTGCAGGGCCGCGAAGGTGTCCAGCTGTTAATATCCCTTCTTGGTCTTTCTTCAGAACAGCAACAAGAATGTGCAGTGGCATTGCTTAGCATTCTGTCCAATGAAAATGATGAAAGCAAATGGGCAATAACTGCTGCTGGGGGTATACCTCCACTTGTTCAGATACTGGAGACAGGATCTCCAAAAGCGAAGGAAGATTCAGCAATGATCCTTAGGAACCTATGCAATCACAGCGAAGATATCCGTGCTTGTGTTGAAAGTGCCGATGCTGTTCCAGCACTACTGTGGCTACTTAAGAATGGAAGCGCAAATGGGAAAGAAATTGCAGCCAGGACATTGAACCATTTGATTCATAAGTCTGACACAACAACTATCAGCCAGCTTACTGCACTGTTAACGAGTGATCTCCCCGAATCTAAAGTTTATGTTTTAGATGCTTTGAAAAGCATGCTTTCTGTTGCTCCCCTTCATGAGATACTACGTGAAGGTAGTGCTTCCTGCGATGCCATTGATACAATGGTTAAAATATTGAACTCTACCAAGGAAGAAACCCAGGCAAAGTCTGCATCAGCTTTAGCGGCAATTTTTGAAACCAGAAAAGACATTCGTGAAAGTACCGTTGCAATCAAGACTCTATCCCCAGCTATGAAGTTGCTTAATCTTGACTCTGAAAGTATTCTTGCCGAGTCCTCACGTTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACCGTGATGTGGCTGCACTAGCCACTGATGCTTTGCCACGCTTGATTGTGCTTGCTAACTCATCATTTTTGGAAGTTGCCGAGCTTGCCACCTGTGCCCTGGCAAATCTCATTTTGGATAATGAGATATCAGAGAAAGCTGCAGCTGAAGAAATTATACTTCCTGCTACAAGGGTTTTGCGTGAAGGCACAATTTCTGGAAAAACTCACGCTGCAGCAGCAATTGCTAGGCTGCTACATTTGCGAGAAATTGATGATACCATAACAGATTGTGTACATCGTGCTGGAACTGTGCTTGCGCTAGTTTCCTTTTTAGAGTCTGCTGATAGTGGCTCTGTTGCCACTTCAGAGGCACTGGAAGCCCTTGCTGTTCTGTCTAGGTCTGTTGGGACGAGTGGGCATGTAAAACCTTCATGGGCAGTGTTGTCTGAATTCCCACACCGCATAAGCCCGATAGTTTTGTCCATTGCAGATTCAAAACCCATGCTGCAGGATAAAGCTATTGAGATATTATCACGCTTGTGCAAAGAACAGTCTACTATTTTAGGAGATTCTGTTGCTAAATCATCTGGCTGTACACCATCCATAGCAAAAAGGGTAATCAACTCTACAAACGTGAAGGTGAAAATTGGTGGAGCTGCACTTCTTATTTGTGCTGCCAAAGTTAATCCCTTGAGAGTAGTGGAAGATCTTAATCTGTCGAACTTGTGTAGCGATCTTATTCAATCTCTTGTGCCGATGCTTAGTTCTGCACACCCTCATTTGGTTAATCAAACTGGTGAAAGAATAGATTCAATCAGCATTTGCAGGTATTCCAGAGAAGTCAATGGGAGTGAATCTAATATAAGCACAGCCGTTATAGGTGGTAGTAACCTAGCAATATGGCTACTATCCGTTCTTGCTTGTTATGATGAGAAGAGTAAGGTTCTAATCATGGATGCTGGTGTGGTTGAGGTTGTCACAGAGAGGATCTCTAATTTTTCTTCCGTGTATTCTCAGAATGAGTATAACGAAGATAGCAGCATGTGGATTTGTGCATTATTGTTGGCAATTTTGTTTCAAGATAGAGACATCATAAGAGCACATGCGACCATGAAATCTATACCAGCACTGGCAAATATGTTGAAGTCTGAAGAGTCAACAAATAGATACTTTGCTGCACAAGCCATAGCCAGTTTGGTCTGCAATGGTAGTAGGGGAACACTCCTGTCTGTTGCAAATTCTGGGGCTGCTGGTGGACTTATTTCATTACTTGGCTGTGCTGATAATGACATACAAGATCTCTTGGATTTGTCGGAGGAATTTTCATTGGTGAGCTATCCTGAGCAAGTTGCTTTGGAGAGGTTGTTTAGGGTTGATGACATAAGAGTTGGTGCTACTTCACGGAAAGCAATACCTGCCCTTGTTGATCTACTGAAACCAATTCCAGATCGTCCTGGAGCTCCATTCCTAGCTCTTAATCTGTTGACTCAACTTGCTAAAGATTGCCTGCCAAATAGGATTGTAATGGTAGAATCTGGAGCCCTGGAAGCACTTAGCAAGTATCTTTCACTGGGTCCACAAGATGCAACTGAGGAAGCAGCTACTGACCTGTTAGGAATTCTATTTAGCAGTACTGAGATAAGGAAACATGAGTCTGCATTTGGTGCTGTTAGTCAACTTGTGGCAGTTTTACGTTTGGGTGGAAGAGGGGCAAGATATAGTGCCGCCAAAGCCTTGGAAAGTCTATTCTCTGCTGATCACATTAGGAATGCAGAAACTGCACGACAGGCTGTACAACCCTTGGTTGAGATTCTTAATACTGGTGTAGAGAGAGAACAGCATGCTGCAATCGCTGCACTTGTTAGGTTATTGAGTGAAAATCCATCTAGAGCACTTGCTGTAGCAGATGTTGAGATGAATGCAGTAGATGTCCTCTGCAGAATCCTTTCATCAGATTGTTCAATGGACCTCAAGGGGGATGCTGCTGAGCTATGTTGTGTCCTTTTCGGTAATACCAGAATCAGGTCCACATTGGCTGCTGCAAGGTGTGTTGAACCTCTGGTATCTCTCCTTGTGACTGAGTTCAGCCCTGCACAAAATTCAGTCGTCCGTGCCTTGGATAAACTTGTGGATGATGAGCAACTGGCCGAACTTGTTGCTGCACATGGTGCAGTTATTCCTCTTGTAGGACTTCTGTATGGCAGGAATTATGTACTTCATGAGGCTATTTCCAGAGCTCTCGTCAAGTTGGGGAAAGATAGGCCTGCTTGTAAGATGGAAATGGTGAAAGCTGGAGTTATCGAAAGCATACTTGACATCCTCCACGAAGCCCCTGATTTCTTATGTGCAGCCTTTGCAGAATTGCTCCGCATATTGACTAATAATGCTAGCATTGCCAAGGGAGCATCTGCTGCAAAAGTGGTTGAACCCCTATTTCATTTGCTCACAAGACCAGAATTTGGACCAGACGGACAGCATAGTGCATTGCAAGTCTTAGTCAACATCTTGGAACATCCACAGTGCCGTGCTGAGCATTCACTGAGCTCTCACCAATCAATTGAACCTCTTTTGCCGTTGCTTGATGCTCCAGTTTCAGCAGTACAGCAGTTGGCAGCTGAGCTTCTCTCGCATCTTCTTTTGGAGGAGCACCTTCAGAAGGATCAAATGATACAACAAATAATTAGCCCTCTAGTACGTGCTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTGAAAGCTTTAGTTAGTATTGCAATGGCATGGCCAAATGAGATTGCAAAGGAAGGTGGTGTTATAGAACTCTCCAAAGTAATTTTGCAAGCTGATCCTTCTCTTCCTCATGCCTTATGGGAATCCGCTGCCTCAGTTTTGTCAAGTATTTTGCAGTTCAGCTCTGAATTCTACTTAGAAGTGCCTGTTGCCGTATTAGTTAGATTGCTTAGATCTGGCTCAGAGAGCACAGTGATTGGTGCATTGAATGCTCTTCTAGTGTTGGAAAGTGACGATGGAACTAGTGCTGAAGCAATGGCGGAAAGTGGTGCCATAGAAGCTCTTTTAGAGCTTCTAAGATCTCATCAGTGTGAGGAGACAGCTGCAAGACTGTTGGAAGTATTGTTAAACAATGTGAAGATCAGAGAAACAAAAGCTATTAAACCTGCAATTGTGCCATTATCCCAGTACCTCTTGGATCCACAAACGCAAGCTCAGCAGGCAAGATTGCTGGCGATTTTGGCCCTTGGAGATCTGTTTCAGAATGAGAGTCTTGCTCGGAGTACTGATGCTGTTTCTGCTTGTCGTGCTTTGGTGAATGTCCTTGAAGATCAACCCACAGAAGAAATGAAAGTTGTAGCCATCTGTGCCCTACAAAACCTTGTAATGTACAGTCGTTCAAATAAAAGAGCAGTTGCTGAGGCTGGTGGTGTTCAGGTTGTCTTAGATCTAATTGGTTCAAGTGATCCTGAAACATCTGTTCAGGCAGCAACCTTCATTAAACTTCTTTTCTCTAATCATACAATTCAGGAGTATGCTTCTAGTGAAACAGTCAGAGCTATAACGGCTGCTATTGAGAAAGATCTATGGGCTACTGGAACTGTGAATGAGGAGTATTTGAAAGCTCTTAATGCTCTTTTTAGCAACTTTCCGCGGCTGAGAGCAACTGAACCTGCCACTTTAAGCATTCCCCATTTGGTTACATCTCTAAAAACTGGCACCGAAGCAACTCAAGAAGCTGCACTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCAGATGCAATACCCCTGCTGCAATACTTGATACAGTCTGGGCCACCTCGATTCCAGGAGAAGGCAGAATTTCTCCTGCAATGTTTGCCAGGAACGCTGGTTGTGGTAATTAAGCGAGGGAATAATATGAAGCAATCAGTGGGAAACCCAAGTGTGTATTGTAAACTTACGTTGGGTAACACTCCTCCAAGGCAAACCAAGGTGGTTTCAACCGGTCCTAATCCTGAGTGGGACGAGAGCTTCGCGTGGTCATTTGAAAGTCCCCCGAAAGGCCAGAAACTTCATATTTCTTGCAAGAATAAAAGCAAAATGGGGAAGAGTTCTTTTGGTAAAGTCACGATTCAGATTGACCGGGTTGTGATGCTAGGAGCTGTTGCCGGGGAATATACACTACTGCCAGAAAGTAAAAGTGGACCTTCGAGAAATTTAGAAATAGAATTTCAGTGGTCTAACAAATGA 6327 0.4402 MKMSLRERGSMEDPDGTLASVAQCIEQLRQSSSSAQEKEFSLKQLLELIDKRENAFSAVGAHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRLKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIYAVSQGGARDHVGSKIFSTEGVVPVLWEQLEKGLKSGNVVDSLLTGALKNLSTSTEGFWNSTIQAGGVDILVKLLTAGQSGTLANVCFLLACMMMEDDSICSKVLAAEATKQLLKLLNPGNDPAVRAEAAGALKSLSAQCKEARREIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCTSPAQVADTLGALASALMIYDSNAESIRASDPLAIEQTLLKQFKPRLPFLVQERTIEALASLYGNTILSIKLANSDAKRLLVGLITMASNEVQDELMKALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLSILSNENDESKWAITAAGGIPPLVQILETGSPKAKEDSAMILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAARTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALKSMLSVAPLHEILREGSASCDAIDTMVKILNSTKEETQAKSASALAAIFETRKDIRESTVAIKTLSPAMKLLNLDSESILAESSRCLAAIFLSIKENRDVAALATDALPRLIVLANSSFLEVAELATCALANLILDNEISEKAAAEEIILPATRVLREGTISGKTHAAAAIARLLHLREIDDTITDCVHRAGTVLALVSFLESADSGSVATSEALEALAVLSRSVGTSGHVKPSWAVLSEFPHRISPIVLSIADSKPMLQDKAIEILSRLCKEQSTILGDSVAKSSGCTPSIAKRVINSTNVKVKIGGAALLICAAKVNPLRVVEDLNLSNLCSDLIQSLVPMLSSAHPHLVNQTGERIDSISICRYSREVNGSESNISTAVIGGSNLAIWLLSVLACYDEKSKVLIMDAGVVEVVTERISNFSSVYSQNEYNEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANMLKSEESTNRYFAAQAIASLVCNGSRGTLLSVANSGAAGGLISLLGCADNDIQDLLDLSEEFSLVSYPEQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALNLLTQLAKDCLPNRIVMVESGALEALSKYLSLGPQDATEEAATDLLGILFSSTEIRKHESAFGAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAETARQAVQPLVEILNTGVEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCCVLFGNTRIRSTLAAARCVEPLVSLLVTEFSPAQNSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDFLCAAFAELLRILTNNASIAKGASAAKVVEPLFHLLTRPEFGPDGQHSALQVLVNILEHPQCRAEHSLSSHQSIEPLLPLLDAPVSAVQQLAAELLSHLLLEEHLQKDQMIQQIISPLVRALGSGIHILQQRAVKALVSIAMAWPNEIAKEGGVIELSKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKAIKPAIVPLSQYLLDPQTQAQQARLLAILALGDLFQNESLARSTDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAATFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNALFSNFPRLRATEPATLSIPHLVTSLKTGTEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVVIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFAWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFQWSNK* 2109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01140 2108 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1139 1323 - -
Pte17g01140 2108 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1987 2108 - -
Pte17g01140 2108 SUPERFAMILY ARM repeat 1322 1608 IPR016024 -
Pte17g01140 2108 Gene3D - 1135 1278 IPR011989 -
Pte17g01140 2108 Pfam C2 domain 1987 2078 IPR000008 -
Pte17g01140 2108 Gene3D - 9 378 IPR011989 -
Pte17g01140 2108 Gene3D - 379 571 IPR011989 -
Pte17g01140 2108 Gene3D - 572 690 IPR011989 -
Pte17g01140 2108 SMART arm_5 269 318 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 439 481 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 51 93 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1268 1309 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 525 565 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1141 1184 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1438 1478 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 483 523 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 226 267 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1355 1395 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 691 729 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 94 134 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1566 1605 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1687 1726 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1814 1854 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1186 1227 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1396 1436 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 1479 1521 IPR000225 GO:0005515
Pte17g01140 2108 SMART arm_5 775 817 IPR000225 GO:0005515
Pte17g01140 2108 Gene3D - 837 1126 IPR011989 -
Pte17g01140 2108 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 494 536 IPR000225 GO:0005515
Pte17g01140 2108 SUPERFAMILY ARM repeat 415 1086 IPR016024 -
Pte17g01140 2108 Coils Coil 255 282 - -
Pte17g01140 2108 ProSiteProfiles C2 domain profile. 1968 2085 IPR000008 -
Pte17g01140 2108 Gene3D - 1279 1632 IPR011989 -
Pte17g01140 2108 Gene3D - 1633 1986 IPR011989 -
Pte17g01140 2108 SMART C2_3c 1988 2084 IPR000008 -
Pte17g01140 2108 SUPERFAMILY ARM repeat 1143 1352 IPR016024 -
Pte17g01140 2108 CDD C2 1989 2079 - -
Pte17g01140 2108 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1986 2105 IPR035892 -
Pte17g01140 2108 Gene3D C2 domain 1987 2108 IPR035892 -
Pte17g01140 2108 SUPERFAMILY ARM repeat 21 604 IPR016024 -
Pte17g01140 2108 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 3 2108 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Pte17g01140 2108 Gene3D - 691 834 IPR011989 -
Pte17g01140 2108 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1337 1571 - -
Pte17g01140 2108 SUPERFAMILY ARM repeat 1537 1985 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01140 Pte-Chr17 26475645 26485412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01140 415 592 U-box Gene Family AT3G46510 30.978 3.80e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01140 - - cave:132165326 3518.01