Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01136 ATGTCCAAGTTATCAGAGCTAGTGATGAACTTATTATGCAAGATACTTATGTTGTTAATTCTTGGAATGGTGGAAATCTGTCATCTACTGAAAGCAGCCTCCGAATTCAAACACAGGTTGAAGGGCACTAGACGCAGAATCGAAACCATCAGACACCTGAAAGTCATCGAGAAGAAGAGTCCTACAATCCGTTACACCAAGGAAATGGGGTGTGTAAAACAACCAGTGCCTCACGAGTGCAGGGTCTGCTTCTCAGAGTTCGAGGAAGGTGAGAAAATCAGGAAGCTGCAATGTAATCACATATACCACAAAGAATGTTTGGATAATTGGTTGCGGCTATGGCCTACTTGCCCGCTCTGCAGGTTTAAGATTTTACCAGAAGATGTTGCGACCAAGCACCGTAATGAGCAGATAGCGGCAATCCTGGAATTTGAGGTCTATGAGGAAATACCTTTTCTTGCTGCCATCTTTACCTGGTGGTAA 483 0.4389 MSKLSELVMNLLCKILMLLILGMVEICHLLKAASEFKHRLKGTRRRIETIRHLKVIEKKSPTIRYTKEMGCVKQPVPHECRVCFSEFEEGEKIRKLQCNHIYHKECLDNWLRLWPTCPLCRFKILPEDVATKHRNEQIAAILEFEVYEEIPFLAAIFTWW* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01136 160 ProSiteProfiles Zinc finger RING-type profile. 80 121 IPR001841 -
Pte17g01136 160 PANTHER - 1 148 - -
Pte17g01136 160 CDD RING-H2_PA-TM-RING 79 121 - -
Pte17g01136 160 SUPERFAMILY RING/U-box 79 127 - -
Pte17g01136 160 Pfam Ring finger domain 79 121 IPR001841 -
Pte17g01136 160 SMART ring_2 80 120 IPR001841 -
Pte17g01136 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 126 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01136 Pte-Chr17 26454090 26454572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01136 52 128 C3H Transcription Factor Family AT2G04240 41.250 1.16e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01136 K16282 - gmx:102661897 121.709