Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01115 ATGCTGAACTCTGATGAAGGAGGACCTGATGTATTCTTTGATTCAGTGGATTGTTTTTTACCTGAGTTGGAGTGTACTAAAATTGATTATGATATTTGGATGAATGAGCCTCGAAGTGTCAAGGAAAGGCGTGAAAGCTTTCTAAGAGTGATAGGTTTGTCTGAGTATTCTTCTTCAATTTGTACCCGAGAGACGAAAATGATGATGGGGTTGGAGAAGCTAAAATGCAGTAGATTAGTCTCTGAGAATTGTACCAAGTTAAGCTGTAATGCCTCTGAATACCAGGCTTATTGTACTGGAGAAATGGCTCATGACACAAGTATTCTGTATGAGGAATTTACAAGAGAAGGTAATAAAGAAGATATTGCCGACTTAACTTCTCAAAACCAGGCTTATTGTACTGGAGAAGTGGTTCATGAAACAAACATTCTGTATGAGGAATTTACAAGAGATGGTAATGAAGACGATGTTGCCAACTTAGCTTCTCAACCAGAGGCTCATGAACCTTCTGCTTGTAGTTCAGACAAGAGACATACCGATGCTGAGGTTAGTGAAGGAAGTCAAAAAATTTCATTGAGCAAGAAAAAATTGAGTTATTTGTGGAAGCACTTAGTGAAAAAGAGGAAGGGAGACATGGATACATCAGTGTTGAAAAGACCAACTGTTGATGCAAAGATGACAAGCAGGATCAAAGTGAAACGAAACAAAAAGAAGTTGATGGAACTGACAGGGGTATATATAGGACAGGAGATCAAAGCGCATAAGGGCTTGATTTGGACAATGAAGTTTAGTCCTGATGGTCATTACTTAGCTAGTGGAGGTGAAGATGGGGTTGTATGTGTATGGCGACTTTCGTCATTGGATGCATCGAGCAAGTTTTCTACTACTGCAGATAAATTTCTCCATAATGTGAAAGAGGATATTCTCGGTTCCTTGAAAAAGGGGTCAAATACACCAGTTGTCCTTCCTAGGAAGGTTTTTCATATTGAAGAATTGCCAATTCACGAATTCTATGGACATTCCAGTGGTGTCTTGGACTTGGCTTGGTCAGATTCGAATTTCATCATTTCAGCTTCCAAGGATAAAACTGTTCGCCTATGGCAAGTTGGCTGTGATGAATGCCTGAATGTCTTTCATCACAATGACTATGTGACATGCTTGCAGTTCAATCCTGTTGACGAAAATTACTTCATTAGTGGATCATTAGATGGGAAAATTCGGATATGGGGGGTATCCGAGAAGCGAGTGGTAGATTGGGCTGATATGAGAGAAGGGATAACTGCAGTAAGTTACCAGCCGGATGGACATGGATTCATGGTTGGTTCCCTCACTGGTTGTTGCCGATTTTATGTGGCATCAGGCCAACATATCCAGCTGGGGGTTCAGATTTTTGTTCAGGGAAAGAAGAAATCATCTGGTAACAGGATAACTGGCATTCAGTTTTCACGAGAGAACTGTCAGAGAGCAATGGTGGCATCAGAAGATTCTAAAATTCGTATATTTGATGGAACTGATGTTCTCCGCAAATACAAAGGTCTTGTCAAGTCAGGAAGTCCGATGTCAGTTTCATGTACATCAACTGGGAAACACATCATTTCTGTTGGGAAGGACTCCCATGTTTACATGTGGAACCTCAGCGAGTCAGATTTTCCATTGAAAAGGCCTAAAAAATGTGTTAGTTCCTGTGAATGCTTCTTTTCTGAAGGAGTGACTGTGGCTATTCCTTGGTCCAGTGTGAGCAAAGAATGGACCCTCCATTCCTCAGAAATGCAACCATGCCTAGATGGTACCCAAATAAGAAATTCGGAAACTTTCTCATTGAGTGGTTGGTTTCCCATTGACAGCAGCGCATGTCGAGGTTCCGTGACATGGCCTGAAGAGAGACTTCCTTTTTACGATGTACCTGTTGTAGCAGACAATTTTGAAGCGGGTGATGATGATCATCCATACAAGCAGCCATTGCTGGTTGGCATTCCTCACTGGACATCTTTTTCTGAAACATGGGGACTGGTCATTGTGACTGCTGATTCCAATGGAAGCATAAAGACGTTCCACAACTTTGGACTTCCCATCCAAGTTTAA 2082 0.4145 MLNSDEGGPDVFFDSVDCFLPELECTKIDYDIWMNEPRSVKERRESFLRVIGLSEYSSSICTRETKMMMGLEKLKCSRLVSENCTKLSCNASEYQAYCTGEMAHDTSILYEEFTREGNKEDIADLTSQNQAYCTGEVVHETNILYEEFTRDGNEDDVANLASQPEAHEPSACSSDKRHTDAEVSEGSQKISLSKKKLSYLWKHLVKKRKGDMDTSVLKRPTVDAKMTSRIKVKRNKKKLMELTGVYIGQEIKAHKGLIWTMKFSPDGHYLASGGEDGVVCVWRLSSLDASSKFSTTADKFLHNVKEDILGSLKKGSNTPVVLPRKVFHIEELPIHEFYGHSSGVLDLAWSDSNFIISASKDKTVRLWQVGCDECLNVFHHNDYVTCLQFNPVDENYFISGSLDGKIRIWGVSEKRVVDWADMREGITAVSYQPDGHGFMVGSLTGCCRFYVASGQHIQLGVQIFVQGKKKSSGNRITGIQFSRENCQRAMVASEDSKIRIFDGTDVLRKYKGLVKSGSPMSVSCTSTGKHIISVGKDSHVYMWNLSESDFPLKRPKKCVSSCECFFSEGVTVAIPWSSVSKEWTLHSSEMQPCLDGTQIRNSETFSLSGWFPIDSSACRGSVTWPEERLPFYDVPVVADNFEAGDDDHPYKQPLLVGIPHWTSFSETWGLVIVTADSNGSIKTFHNFGLPIQV* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01115 693 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 286 - -
Pte17g01115 693 MobiDBLite consensus disorder prediction 170 184 - -
Pte17g01115 693 SUPERFAMILY WD40 repeat-like 247 548 IPR036322 GO:0005515
Pte17g01115 693 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 369 - -
Pte17g01115 693 Gene3D - 236 584 IPR015943 GO:0005515
Pte17g01115 693 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Pte17g01115 693 PRINTS G protein beta WD-40 repeat signature 397 411 IPR020472 -
Pte17g01115 693 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Pte17g01115 693 SMART WD40_4 371 410 IPR001680 GO:0005515
Pte17g01115 693 SMART WD40_4 244 283 IPR001680 GO:0005515
Pte17g01115 693 SMART WD40_4 503 544 IPR001680 GO:0005515
Pte17g01115 693 SMART WD40_4 330 368 IPR001680 GO:0005515
Pte17g01115 693 SMART WD40_4 412 451 IPR001680 GO:0005515
Pte17g01115 693 SMART WD40_4 466 502 IPR001680 GO:0005515
Pte17g01115 693 PANTHER WD REPEAT DOMAIN 44 26 690 IPR040324 -
Pte17g01115 693 MobiDBLite consensus disorder prediction 162 187 - -
Pte17g01115 693 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 292 IPR001680 GO:0005515
Pte17g01115 693 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 419 IPR001680 GO:0005515
Pte17g01115 693 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 377 IPR001680 GO:0005515
Pte17g01115 693 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 409 - -
Pte17g01115 693 Pfam WD domain, G-beta repeat 250 282 IPR001680 GO:0005515
Pte17g01115 693 Pfam WD domain, G-beta repeat 373 409 IPR001680 GO:0005515
Pte17g01115 693 Pfam WD domain, G-beta repeat 333 367 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01115 Pte-Chr17 26227880 26231151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01115 284 545 U-box Gene Family AT2G33340 26.460 1.65e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01115 K20241 - qsa:O6P43_023350 648.277