Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01114 ATGGTCAGAGAAGACCTTTCCATCACGATTCCTAGCTTCTTCAGGTGTCCTATATCGCTTGACGTGATGAAGTCTCCTGTCAGTCTTAGCACCGGCGTCACCTACGACCGTTCCAGCATCCAACGGTGGCTAGAAAACGGCAACAACACCTGCCCTGCCACCATGCAGGTCCTTCAAAGCAAAGAGTTTGTACCCAACCATAATTTACAGCGCCTAATTCAGATCTGGTCTGACTCCGTCCGGCAGCGCGCCCCCTCAGCCGGCTCGCCTGCTAATGACTTGGTTCTCTCACGGGAGCAAGTCATGGAGATAGTCCGAGACATGGAGTGTCAGAATGCCAACAGCTTGGATTCCCTCACTAAGATTCTTCGCTTTGCGGAGGAAACGGAAGAGAACCGGGAGTTCCTTGCCAAAACCGACGCTTTTCTACTCAAGCTCGTTGATTTTCTCGATAATGCGGATGACGGAGTGGCGTTGACAGTTCCATTTCTGGAGCGGGTCGTTCAGCTGTTGAATTTGGTTATAAACAAGATAGACAATCTCCAGGAATGGAAGAACTCGTTGTTAAAAAACCACCGCCACTGCCTAGCTTCTCTGCTTCTTGTTCTGCAACAAGGCAATTGCGATTCCAGAATCTGTTCCGCTAGGGTTTTGGAATCCATCGCCATCGACGCCGAATCAAAGTTGTTCATTGCCGAAAAGGATGGCCTGATAATCGAGTTGCTGACGCGAATCAAAGCAGACAAAGATCAAACTCTCATTGAAGCTAGCTTGTGTTGCTTAATCTCAATCTCAAAGCCAAAGCGAATCAAGGGCATACTAGTACATCTCGGAGCCATCCAAACACTATCCGAACTACTCTCTGAATCAAACCCGAACCCGACCGTATCGATAACAGAGAAAGTGTTGAAGCTGCTCGAAACGTTGTCGTCTTGCAAGGAAGGGCGGTTAGAGATATGCGAAGACAAAGCATGCTTGCCGGAGATATTACAGAAAGTGTTGAAAGTATCAGGTGCGGCGACGGAGCACGCTGTGACGATCCTTTGGAGCGTGTGTTATCTATTCAGAGATCAAAGGGCTCAGGACGCAGTGATTAAAGCAAATGGCCTGACAAAGATTCTGCTATTGATGCAGAGTAATTGTTCACCTGCGGTTCGGCAAATGTCGAACGATTTGCTTAAGGTTTTCCGGGTGAACTCAAAATCCTGTCTTTCATTTTATGACACGAAGACGACTCATATCATGCCCTTTTGA 1254 0.4793 MVREDLSITIPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLENGNNTCPATMQVLQSKEFVPNHNLQRLIQIWSDSVRQRAPSAGSPANDLVLSREQVMEIVRDMECQNANSLDSLTKILRFAEETEENREFLAKTDAFLLKLVDFLDNADDGVALTVPFLERVVQLLNLVINKIDNLQEWKNSLLKNHRHCLASLLLVLQQGNCDSRICSARVLESIAIDAESKLFIAEKDGLIIELLTRIKADKDQTLIEASLCCLISISKPKRIKGILVHLGAIQTLSELLSESNPNPTVSITEKVLKLLETLSSCKEGRLEICEDKACLPEILQKVLKVSGAATEHAVTILWSVCYLFRDQRAQDAVIKANGLTKILLLMQSNCSPAVRQMSNDLLKVFRVNSKSCLSFYDTKTTHIMPF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01114 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Pte17g01114 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Pte17g01114 417 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Pte17g01114 417 PANTHER WDSAM1 PROTEIN 8 405 IPR045185 GO:0061630
Pte17g01114 417 CDD RING-Ubox_PUB 11 63 IPR045210 -
Pte17g01114 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Pte17g01114 417 SUPERFAMILY ARM repeat 193 408 IPR016024 -
Pte17g01114 417 Gene3D - 160 399 IPR011989 -
Pte17g01114 417 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Pte17g01114 417 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01114 Pte-Chr17 26218725 26221219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01114 1 418 U-box Gene Family AT5G64660 53.647 2.41e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01114 - - qsa:O6P43_023349 568.155