Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01112 ATGAAGCTATTTGAAGATGTTTTTCAGGACTTCCACTCTAGGAGACTACTGATTCACAGTTCTGACAACCAATCACCCAATTCAGCCAACCCTCCTTCAACTCATGATTCAGTTGACTATACAGGAGACAACAGCTTTGATGCAAATGTTGTTATGGTACTATCAGTTCTCTTGTGTGCTCTTATATGCTCTTTGGGGTTGAACTCTATCATCAGGTGTGCATTGAGGTGCTCGAGATTCGCATCCAATGATGAATCTGTGAACAGCCCTCCAGCTCGATTAGCCAACACTGGAATCAAACGTAAAGCTCTAAGAACTTTCCCCATAGTAAATTACTCGATGGAGTTGAAGCTTCCAGGCTTGGACACAGAGTGTGCGATTTGCCTGACAGATTTTGCTAATGGTGAGCGTGTGCGCCTCTTGCCAAAGTGCAACCATGGATTTCATATCCGGTGCATTGACAAGTGGCTGAGCTCACACTCTTCGTGTCCAAAATGTAGACAGTGTTTAATTGAAACATGCCAGAAGATAGTTGGCTGCAGCCAAGTTAGCTCAGCAACCCCACCTGCATCAGTGGCATCTGAATCACTTGTAAGAATTGCTCCTTTAGAACCTGAAGCTTTGATTCGTGACTACAGGCAAAGCTGCTAG 651 0.4455 MKLFEDVFQDFHSRRLLIHSSDNQSPNSANPPSTHDSVDYTGDNSFDANVVMVLSVLLCALICSLGLNSIIRCALRCSRFASNDESVNSPPARLANTGIKRKALRTFPIVNYSMELKLPGLDTECAICLTDFANGERVRLLPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSQVSSATPPASVASESLVRIAPLEPEALIRDYRQSC* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01112 216 CDD RING-H2_EL5-like 124 167 - -
Pte17g01112 216 PANTHER RING-H2 FINGER PROTEIN ATL78 7 208 IPR044602 GO:0016567|GO:0016740
Pte17g01112 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 171 IPR013083 -
Pte17g01112 216 Pfam Ring finger domain 124 167 IPR001841 -
Pte17g01112 216 FunFam RING-H2 finger protein ATL73 86 172 - -
Pte17g01112 216 SMART ring_2 125 166 IPR001841 -
Pte17g01112 216 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Pte17g01112 216 SUPERFAMILY RING/U-box 109 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01112 Pte-Chr17 26205905 26207298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01112 15 171 C3H Transcription Factor Family AT3G10910 49.102 1.66e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01112 K19040 - qsa:O6P43_023336 315.079