Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01107 ATGCTGCGGGGGAACTCTGGTTTACCGGAACATTCTGGTGCTTGTATTCCAACCCCGGAAATCAATGGCGAAGGTAATGGTGATGCGGCTGACCAGGCTTCAATTGGATTTGCAGAGGAAGAAGAGAGAGCTGGGGATGGACCCACGTGGACTGCCAATCGTTGGCCTCGTGAGGAGACGCTGGCTTTGCTGAAGATAAGGTCCGAAATGGATACTGCTTTCAGAGATGCTACCCTTAAAGCTCCTCTTTGGGAACAGGTGTCAAGGAGATTGGCCGATCTAGGTTATAATAGGTCTGCGAAGAAATGCAAGGAGAAGTTTGAGAACATTTGGAAGTACCATAGAAGGGTTAAGGAAGGACATCTTGCTCGATCCAATGGAAAAAATTATCGGTTTTTTGAGCAATTAGAAGCTTTAGATAGCAATCCAATACTTTTTGGTTCTTCTGCAGTAAAAAATGACGCTTCTTTGGTTGGCACAGCAGCTGATACGATGAAAACGAATCCAGGAAATGTGATTCAACATGCTATCCCGTGTTCGATTTTGATGCCCTTCGAGAATACTGTAGATAAATCAGGTTCTGCCACCCCATCTTCAAGCAAAGAATCAGAAGGCACAGACAGAAAGAAGAGAAAACTTGTGGAGTTTTTTGAAATGTTGATGAAGCAAGTTGTCGAGAAGCAAGAGAATCTACAGAAGGAATTCTTGGAGGTGTTAGAAAAATGCGAACGAGATCGAATGGCTAGAGAAGAAGCTTGGAAAAGTCAAGAATTGGCACGGATTAAGAGGGAGGGGGAGCTTCTGGCTCAGGAAAGATCAATTGCTGCTGCAAAGGATGCAGCTGTGCTTGCTCTTCTAAAGCAATTTACAGGACAAGAAGGGCGTCAGCAATTACCCGAGAATATTCAGGTTCAGAATCTTGTTCCACAAGGGAATGAGAAGGAGAAAGAAAACGGTGATAGTGGCAACATAATTGATAAGCAGCAAGAAACAAACCGTGGTGGGTTTTCATTGCAGTTGAGCTCATCAAGGTGGCCAAAAGCTGAGGTGGATGCTTTGATTAGTCTGAGGACTAACCTTGATATGCATTACCAAGAGAATGGATCTAAAGGGCCGTTGTGGGAAGATATATCCTCTGCAATGAAAAGGCTTGGTTATGATCGCAATGCAAAGAGATGCAAAGAAAAATGGGAAAACATAAACAAGTACTTTAAAAAGATGAAAGAAAGGAATAAGAGAAGGCCTGAAGATTCTAAAACTTGTCCTTATTTTCTGCAACTTGAGGCCTTATACAGTAAAAAACCCAAAATGGTTGCTGATTCTACTGGTTCTGCCAATGACACGAAGGCTGAGGAGCTCTTGCTGCCTATAATGAGCGGTCAAGAGGTGCAACAGCCACCCAAGTCGGTAACTGATGATGGAAACCAAGGGAACAATTGTAACAATAAAGGATAG 1455 0.4337 MLRGNSGLPEHSGACIPTPEINGEGNGDAADQASIGFAEEEERAGDGPTWTANRWPREETLALLKIRSEMDTAFRDATLKAPLWEQVSRRLADLGYNRSAKKCKEKFENIWKYHRRVKEGHLARSNGKNYRFFEQLEALDSNPILFGSSAVKNDASLVGTAADTMKTNPGNVIQHAIPCSILMPFENTVDKSGSATPSSSKESEGTDRKKRKLVEFFEMLMKQVVEKQENLQKEFLEVLEKCERDRMAREEAWKSQELARIKREGELLAQERSIAAAKDAAVLALLKQFTGQEGRQQLPENIQVQNLVPQGNEKEKENGDSGNIIDKQQETNRGGFSLQLSSSRWPKAEVDALISLRTNLDMHYQENGSKGPLWEDISSAMKRLGYDRNAKRCKEKWENINKYFKKMKERNKRRPEDSKTCPYFLQLEALYSKKPKMVADSTGSANDTKAEELLLPIMSGQEVQQPPKSVTDDGNQGNNCNNKG* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01107 484 SMART sant 51 113 IPR001005 -
Pte17g01107 484 SMART sant 341 403 IPR001005 -
Pte17g01107 484 FunFam Trihelix transcription factor GT-2 55 116 - -
Pte17g01107 484 CDD GT1 343 408 - -
Pte17g01107 484 MobiDBLite consensus disorder prediction 436 484 - -
Pte17g01107 484 CDD GT1 53 118 - -
Pte17g01107 484 MobiDBLite consensus disorder prediction 307 332 - -
Pte17g01107 484 ProSiteProfiles Myb-like domain profile. 47 111 IPR001005 -
Pte17g01107 484 MobiDBLite consensus disorder prediction 462 484 - -
Pte17g01107 484 Coils Coil 214 245 - -
Pte17g01107 484 FunFam Trihelix transcription factor GT-2 345 406 - -
Pte17g01107 484 Pfam Myb/SANT-like DNA-binding domain 53 139 IPR044822 -
Pte17g01107 484 Pfam Myb/SANT-like DNA-binding domain 343 430 IPR044822 -
Pte17g01107 484 PANTHER FI21293P1 26 470 - -
Pte17g01107 484 MobiDBLite consensus disorder prediction 1 30 - -
Pte17g01107 484 Gene3D - 345 406 - -
Pte17g01107 484 Gene3D - 55 116 - -
Pte17g01107 484 ProSiteProfiles Myb-like domain profile. 337 401 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01107 Pte-Chr17 26178733 26180514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01107 344 460 Trihelix Transcription Factor Family AT1G76890 38.211 1.66e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pte17g01107 Myb_DNA-bind_4 6.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01107 - - qsa:O6P43_023330 538.11