Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01098 ATGTATGAAATGGTTTCTGCTTTAACATATGTTGTGTCGGGCGACATGCCCAATAAGCCTTGGGTACAGGATCAGTATCCAAACGCTAATGTTGGGGAACGTAATATTATTACATCAGGTGATATTAGGACAACTAGCTTTGCTGCACCTTCTGTCTCTACGACTATGTTGTCGTCTTCCTCCTCATCTTCTTCTTCTGGTATTAGTGGTCACAAGAGAGGGAGAGAAGATGCGAGCGGTGGAGACCGGTCTGAGTCGGTGGCAAGGCCTTTTAGACCTTTTGGGGACTTTCACTTTCCAAAGGGAAACTCGTCCTCTGCTCTACGAAGAACCCCAGAAAATACAAGCACCCGTGCCATGAGTACCATGGTGACAACCGAAACAGCACTAGCTCCTCTATACGAGTATAGTAGACAGAATGTTAGAGAGGAGCCAAGAAGAAAATACAGGGGAGTGAGACAGAGACCCTGGGGAAAATGGGCAGCAGAAATTAGAGACCCCTTCAAGGCTTCCAGAGTTTGGTTGGGCACATATGACACAGCTGAAGCAGCCGCGAGAGCCTATGACGAAGCTGCATTGAGGTTTAGAGGCAACAAAGCGAAACTCAACTTTCCAGAAAACGTAACGCTTAGGCAACCTTCCATTACTCCAGGGACGCCCCAGTTGAGGATTTCGAGTTCTCCAGATACCCTTGTGTCTATTTCCACTTCCACCGACCCAATCGTTCACACTCGATCCGATCTTCAATATTTGCAGAACAGGCAAGAGGTGAAGAACCAACCCAGCTATCCTGAGAGTGAGAGAGTGAATTTTCAGAACCATCCTATGAGGTTCTACACTCACATGATCATGCCACAGACAGAGACAATGGTTTCGCACGCTCTGTCATCATCTTCATCAACACCTCCTCAGGTACCCGCATCTTCGTCGTCGCCTCCTTCAACAGTTTATGTTTCTTCAGCATCTTTGGCGCCAGTGTCACTTCCCTTATTCCACTCACTCCAGAGACCGGCTCAATCAAGAATGAGCACTGAGCCACACACTACCCAAATACAAGCCGTTCAAACTTCGCGAGATCAACAACTATCGTCTTCTGGATAG 1101 0.4759 MYEMVSALTYVVSGDMPNKPWVQDQYPNANVGERNIITSGDIRTTSFAAPSVSTTMLSSSSSSSSSGISGHKRGREDASGGDRSESVARPFRPFGDFHFPKGNSSSALRRTPENTSTRAMSTMVTTETALAPLYEYSRQNVREEPRRKYRGVRQRPWGKWAAEIRDPFKASRVWLGTYDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPSITPGTPQLRISSSPDTLVSISTSTDPIVHTRSDLQYLQNRQEVKNQPSYPESERVNFQNHPMRFYTHMIMPQTETMVSHALSSSSSTPPQVPASSSSPPSTVYVSSASLAPVSLPLFHSLQRPAQSRMSTEPHTTQIQAVQTSRDQQLSSSG* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01098 366 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Pte17g01098 366 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Pte17g01098 366 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Pte17g01098 366 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Pte17g01098 366 MobiDBLite consensus disorder prediction 335 366 - -
Pte17g01098 366 PANTHER DNA-BINDING DOMAIN 88 296 IPR044808 GO:0003700|GO:0009873
Pte17g01098 366 FunFam Ethylene-responsive transcription factor 2 147 206 - -
Pte17g01098 366 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
Pte17g01098 366 MobiDBLite consensus disorder prediction 104 121 - -
Pte17g01098 366 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Pte17g01098 366 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Pte17g01098 366 MobiDBLite consensus disorder prediction 54 69 - -
Pte17g01098 366 MobiDBLite consensus disorder prediction 291 317 - -
Pte17g01098 366 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Pte17g01098 366 MobiDBLite consensus disorder prediction 54 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01098 Pte-Chr17 26102618 26105190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01098 72 249 AP2-EREBP Transcription Factor Family AT5G64750 49.206 3.39e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte17g01098 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01098 - - qsa:O6P43_030387 231.876