Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01084 ATGAGAGAAAGAGGTGAGATGGCTATCCCTCATTTGTTCAGATGCCCCATTAGTCTGGATTTACTGGAAGATCCAGTGACTCTATGTACAGGCCAAACATATGATAGGTCAAGCATTGAGAAATGGTTGGCTGCAGGTAACTTCACATGTCCTGTCACAATGCAGAAGCTTCATGATCCGTCCATGGTTCCCAATCACGCTCTTCGTAATTTGATTGACCAGTGGCTTCAACTGGGTCCCCAGTTTGACTCTGGTTACGCGGCAGAAATGGATTCTCTGGCAACCATGAAACATCAGCTTGAATCTCTTTCAACCAGTTTAGATTGCAAGCTCCGAGTAATTCATAGGATAAAATTTTTACTTGATGAGGCTTACCCTCCCAGAAACTCTTGTTTCTTCCAGTTAGGATTCTTATCTTTGCTCTTAGAAATTGTGTTTGGCAGATTTGGAACTACAGAAATCTCCAAACATGAGCATGTTGAATTCATAGAACTATCACTGTCTTGCATTGTGAAGTTGCTCTCTCTGAGCAGTCTGCAAATTTTAAATAATCTCAAAGAAGAGTCTAGACTTGCATCATTCTCACAATTGTTCGTACAGGGTACCCTTACTATGAAGACTAGTTTATGTCTACTCATGGCGGCATTATCATCGTCAGAGACAAAGGATCTGTGTGGTGTACTTGGAAATTCACAGCGATTACTGCATGAGATTGTTCTTCTTGTTCCTCAAAATTCTGAGGCCTCCAAGGTCGCATTAAAAGCTTTAGCAGCACTGTGTTCTTTAGAATGCAACAGAGAGAATTTAATAAAAGCAGGAGCAGTAGATGCAATCATTACGTGCATTGCAAGATCTGAAAGACGAGGAGCAAAAAACTTGACACCACCTTTGGCTATGACAGTGATAGAGAAGCTTTTAGAGCATGAAAGTGCAAAAGAGGCACTAATATGTAACCCCAACGGCGTTCGTGCTCTTGTCACAATGGTGTTCAGGGTGTCAGACCATGAATGGAGTGAGAGTGCTGTTGGGTCACTGTTGCTTGTTTGTCATGATTCTTGTCGCGCAAGGGAGGAGGCCATTGGTGGGGGAGTGTTGACTCAGTTACTGTTGCTTCTGCAGAGCCAATGCGATGCCAGAATAAAAACAAAGGCAAGAATTCTGCTCAAAATGCTGAGATCCAAGTGGGTCGAGGACCTTAGATAG 1203 0.4289 MRERGEMAIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLAAGNFTCPVTMQKLHDPSMVPNHALRNLIDQWLQLGPQFDSGYAAEMDSLATMKHQLESLSTSLDCKLRVIHRIKFLLDEAYPPRNSCFFQLGFLSLLLEIVFGRFGTTEISKHEHVEFIELSLSCIVKLLSLSSLQILNNLKEESRLASFSQLFVQGTLTMKTSLCLLMAALSSSETKDLCGVLGNSQRLLHEIVLLVPQNSEASKVALKALAALCSLECNRENLIKAGAVDAIITCIARSERRGAKNLTPPLAMTVIEKLLEHESAKEALICNPNGVRALVTMVFRVSDHEWSESAVGSLLLVCHDSCRAREEAIGGGVLTQLLLLLQSQCDARIKTKARILLKMLRSKWVEDLR* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01084 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pte17g01084 400 CDD RING-Ubox_PUB 10 57 IPR045210 -
Pte17g01084 400 PANTHER WDSAM1 PROTEIN 6 397 IPR045185 GO:0061630
Pte17g01084 400 SUPERFAMILY ARM repeat 243 391 IPR016024 -
Pte17g01084 400 SMART Ubox_2 12 75 IPR003613 GO:0004842|GO:0016567
Pte17g01084 400 FunFam RING-type E3 ubiquitin transferase 9 80 - -
Pte17g01084 400 ProSiteProfiles U-box domain profile. 8 82 IPR003613 GO:0004842|GO:0016567
Pte17g01084 400 SUPERFAMILY RING/U-box 6 77 - -
Pte17g01084 400 Gene3D - 230 397 IPR011989 -
Pte17g01084 400 Pfam U-box domain 9 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01084 Pte-Chr17 25867907 25869755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01084 7 395 U-box Gene Family AT3G19380 31.436 1.02e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01084 - - qsa:O6P43_030325 455.292