LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte17g01077	ATGAAGTTGAAGTTGATCGGAGATCGGAAGGCCGGCGACGGCGATTCCATCTCTGATGACGACGGCAGTGGGAGTGGTGGGACGGTGTTGGTAGGTGTCAAGTTGGATTCTTACAGCAGGGAATTGCTGACTTGGGCACTTGTTAAAGTCGCTCAACCGGGTGACATTGTTGTTGCTCTTCATGTACTTGACGCTGTGAAAGAGTGCGCAGCATCGGTTATCTCTCTCGTGAAGACTTTCGACTCTGTTCTCTCTGTATATGAAGGTTTCTGCAACTTGAAACAGGTTGATCTGAAGCTTAAGGTAATAAGAGGTTCTTCACCTCGAGAACTTCTAGTTCAGGAAGCCAAATCACATGGTGTCGCGACTGTGGTAGTGGGAGCTTCTAGAACTCACCATAGAATTCGGTCGAATGCATCCGTTGCAAAGTACTGTTCGAGGAAATTGCCCAAGTGTTTCTCTGTTTATGCCGTCGATAGTAGCAAAATTGTGTTTCACAGAGAAGCCACCAAAACATGTAGCCAACATCACCAAGTGAAATCAAATCAAGGCCTTGGTTGTTCGAGAAGATCTTTGTCAGACTCTACTGAAAAATTCAGGGAGAATTGCAAACGTTGTGCTGAGACCTCAGTATCACCGGTACCTGAAATTTTGGAAAAGGAAAATTCAATGGCTTTAGTACCAGTTCAAATGGTAGCAGCTAAGGAACCAAAGCATAGTTGGTCCATCCTTAGGCAAATATTTTTTCTTGATAAACATATGGAGAAGACTTTTCTGGGGAAATTCTCTCTTTCCAATTGGCGACAATCTAGCAGGCACCCGTCAGCTGTGGTATTCCCAGATCAGAAACAGCTACGTTCTGATTTGAATTGTGGTTCCACCCTGAACGGGGAAAACTGTGCAGTAGTTCCATACGGATCCAACGTTGACGATAGTTTGAAGAGGCTGCCAAAGGAGCTGCTGGATTTGCGCGAGAAATACTCATCTAAGTGCATATTATATGATTATGAAGATCTTGCTTCCGCAACAGCTTACTTCAGTCCTGAAAGATTTGTTGGGGAAGGTGGGAGTAGCCGTGTTTTTAGAGGATATCTTCCACATGGCAAGGAAGTAGCAGTGAAAATCTTGAAGCCTTCTGAAGATGTATTAAAGGAATTTGTCCAGGAAATTGAGATCATTACAACCTTGCGGCACAAGAACATAATATCTCTCTCTGGATTTTGTTGTGAGAACAATAATTTGTTACTGGTCTACGATTTCCTGTCCAGAGGAAGCCTAGATGAGAACCTCGATGGTAACAAGAGGGATGGGAATGGATTTCGTTGGCAAGAGAGGCATAAGGTGGCTGTAGGTGTGGCTGAGGCACTAGACTATTTACACAATGGCTGTGCTGAACCTGTGGTCCATAGAGATGTTAAATCATCAAATATACTTCTTTCAGAAGATTTTCAGCCACAGCTCTCCGATTTTGGACTTGCTAGTTGGGCTTCCTGTTCCGCTAAAGTTACCTGTACTGATGTGGCAGGAACCTTTGGATATCTTGCACCTGAGTACTTCATGCATGGGAGGGTGAGTGACAAAATTGATGTCTATGCTTTTGGTGTGGTACTTTTGGAGCTGCTATCGGGCAGAAAGCCTGTTGACAATGAAAATCCAAAGGGTCAGGAGAGCCTGGTGATGTGGGCGGCACCAATCTTGAAGAACGGGAAGCTTTCCCAATTGCTGGATTCAAGTATAAGCAGTGATTATGATCCCCGTCTGATTGAAAGAATGGTTTTGGCAGCGAAACTTTGCATCATACGGGCCCCTAAACTTAGACCCCAAATGAGACTTATCTTGCAGCTTCTCATTGGTGACCAAGATGTGATTAATTGGGCGAAGCAGCAAGTCAGTGCATCAGAAGCAGCTGATGCCTTGGATGGAGATCTGATTCCCGCTAACATTCAGTCTCATCTAAATCTAGCATTACTAGATTTTGAGGATGATTCAGTTTCCGCCAGTAGCACACCAAGAAGTGTTTCGATAGAGGAGTATCTGCAAGGAAGGTGGAGCCGCTCATCAAGCTTTGATTAA	2073	0.4452	MKLKLIGDRKAGDGDSISDDDGSGSGGTVLVGVKLDSYSRELLTWALVKVAQPGDIVVALHVLDAVKECAASVISLVKTFDSVLSVYEGFCNLKQVDLKLKVIRGSSPRELLVQEAKSHGVATVVVGASRTHHRIRSNASVAKYCSRKLPKCFSVYAVDSSKIVFHREATKTCSQHHQVKSNQGLGCSRRSLSDSTEKFRENCKRCAETSVSPVPEILEKENSMALVPVQMVAAKEPKHSWSILRQIFFLDKHMEKTFLGKFSLSNWRQSSRHPSAVVFPDQKQLRSDLNCGSTLNGENCAVVPYGSNVDDSLKRLPKELLDLREKYSSKCILYDYEDLASATAYFSPERFVGEGGSSRVFRGYLPHGKEVAVKILKPSEDVLKEFVQEIEIITTLRHKNIISLSGFCCENNNLLLVYDFLSRGSLDENLDGNKRDGNGFRWQERHKVAVGVAEALDYLHNGCAEPVVHRDVKSSNILLSEDFQPQLSDFGLASWASCSAKVTCTDVAGTFGYLAPEYFMHGRVSDKIDVYAFGVVLLELLSGRKPVDNENPKGQESLVMWAAPILKNGKLSQLLDSSISSDYDPRLIERMVLAAKLCIIRAPKLRPQMRLILQLLIGDQDVINWAKQQVSASEAADALDGDLIPANIQSHLNLALLDFEDDSVSASSTPRSVSIEEYLQGRWSRSSSFD*	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte17g01077	690	ProSiteProfiles	Protein kinase domain profile.	346	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte17g01077	690	PANTHER	OS08G0249100 PROTEIN	79	630	IPR046958	-
	Pte17g01077	690	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	26	159	-	-
	Pte17g01077	690	CDD	USP_Like	28	152	-	-
	Pte17g01077	690	Gene3D	HUPs	27	158	IPR014729	-
	Pte17g01077	690	Gene3D	Phosphorylase Kinase; domain 1	310	420	-	-
	Pte17g01077	690	ProSitePatterns	Protein kinases ATP-binding region signature.	352	374	IPR017441	GO:0005524
	Pte17g01077	690	SUPERFAMILY	Protein kinase-like (PK-like)	327	616	IPR011009	-
	Pte17g01077	690	FunFam	Putative receptor-like serine/threonine-protein kinase	421	632	-	-
	Pte17g01077	690	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	315	420	-	-
	Pte17g01077	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Pte17g01077	690	MobiDBLite	consensus disorder prediction	1	24	-	-
	Pte17g01077	690	SMART	serkin_6	346	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte17g01077	690	Pfam	Universal stress protein family	28	151	IPR006016	-
	Pte17g01077	690	MobiDBLite	consensus disorder prediction	1	17	-	-
	Pte17g01077	690	Gene3D	Transferase(Phosphotransferase) domain 1	421	636	-	-
	Pte17g01077	690	Pfam	Protein kinase domain	349	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte17g01077	690	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	28	150	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte17g01077	Pte-Chr17	25807917	25811850	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte17g01077	334	617	Strubbelig Receptor Gene Family	AT4G22130	40.972	2.16e-68	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Pte17g01077		Pkinase	1.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte17g01077	-		-	gmx:100815722	793.497