Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01048 ATGCTTTCAAATCTAAATGGAGTGCCTTGGATGGATACTGGAGAAAAAGAGACTCTGTCAGAGTATTGGGATACTAGGAATCCCAACATTAACAAGAACAACTTGGCTGTAGTTGAGAACAGAGATGAGTTGGGTGCTCTGTCCAGATTGAGAAGGATGCTTGGAGTAGAAGACGACTGGTATGTGACAAGTAACAATATCCAAAGCAACTCGGATATGAGAAACATGAGTTTACAGCCGAACCACAGTGATCCAGATAACTTATTGCTACACCCTGTAGGTTCGTCCTCTTCTTCCTCACCATCTTCATCTGTGTTCAACAATCTCACCCCAGCTCAGCTAAATTACTTGCTCTCACAATCAAATCCACCTGTAGCTTCAGCTCTTAGTTCCGTGTCTGGTAGCCAGTTGGACAAAGGTTTTGACTTGGCCTCTGAGGTAAGAAATCTTGGAGCCCAAGCTTCAAATTCTTTAGATATGCTCAACAGGGCAGGTGACTTATTTAATGGCTTCACTGAATTTAGCTCAAATAACCAGATGATCCTCCCTAATTCGAGTTCAGAACTCCAATTGCCGACTAGCCGTTTCCCCCAATTGCCTGAAAGCCATGTTCCCGGTTTAGCCAGTTTTCAGAGTTTCAATGAGAGTGCTGCAAAACCGTTGCAGTTCAATCTGACTAATTCATTCAAACCCCTTGAAGCTTTTGCCTCACCCGGATCGGATACAACTCTTTTTAAGAGTTCCCTCGGAAATGACCTTCAGGAGAATGGAAGTAATTTGGGGCGTTCGGTATTCGAGAGTGCTTTGCGTCTCAATAGGTTTGAAGGGGATAAGGGGACACAAATCATGGGAGAGGAGAAGGAGAAGAAAAGGAAGATGAGAGATGGAGATGGATTGGAAGATGTTAGTGTGGATGTGTCAGCACTGAATTATGATTCTGATGAGTTAACTGAGAATTATGAAGCTGCAGACAGTGGCAAGAATGGTGGGAACAGCTCAAATGAGAATAGTACAGTTACTGATGCAAAGCAGAATGGAAAAAAGAAAGGAATGCCTGCTAAGAATTTAATGGCTGAACGTCGCAGGAGGAAGAAGCTCAACGACAGGTTGTACTCGCTAAGGATTGCTGTCCCCCGTATAAGCAAAATGGATAGGGCTTCCATACTAGGAGATGCAATCGAATACTTAAAGGAACTGCAAACGAAAATCGATCATCTCCAAAGAGAATTGGACATCACACCCTCCAGTTCTTCTGTGACCCCTGCTTCAAGCTTCAATCCTCTGACTTCTGCTCCAACCACACCAACCAACTCCATCAAGGATGACCTCTGCCCCAGCTGGCTGCAGAGACTGAATGGCCAGCCTGCAAGAGTTGAGGTTCGGCTGTGTGAGGGAGGATGGGTGAATATTCACATGTACTGCAGCTACAAGCCTGGTATCGAGCTATCCACCATGAGGGCTTTGGAGAAACTTGGGATCCATGTGCATGTAGCAGCCATGAGCTGCTATGGTGGCTTTGCCTTGGATATCTTCAGAGCTGAGCAATGCAAGGAAGGTCAAGATCTCCACCCTGACCAAATCAAAGCAGTTCTTCTGGAATCAGCTGCGTTTCCCATAGCTTGA 1623 0.4535 MLSNLNGVPWMDTGEKETLSEYWDTRNPNINKNNLAVVENRDELGALSRLRRMLGVEDDWYVTSNNIQSNSDMRNMSLQPNHSDPDNLLLHPVGSSSSSSPSSSVFNNLTPAQLNYLLSQSNPPVASALSSVSGSQLDKGFDLASEVRNLGAQASNSLDMLNRAGDLFNGFTEFSSNNQMILPNSSSELQLPTSRFPQLPESHVPGLASFQSFNESAAKPLQFNLTNSFKPLEAFASPGSDTTLFKSSLGNDLQENGSNLGRSVFESALRLNRFEGDKGTQIMGEEKEKKRKMRDGDGLEDVSVDVSALNYDSDELTENYEAADSGKNGGNSSNENSTVTDAKQNGKKKGMPAKNLMAERRRRKKLNDRLYSLRIAVPRISKMDRASILGDAIEYLKELQTKIDHLQRELDITPSSSSVTPASSFNPLTSAPTTPTNSIKDDLCPSWLQRLNGQPARVEVRLCEGGWVNIHMYCSYKPGIELSTMRALEKLGIHVHVAAMSCYGGFALDIFRAEQCKEGQDLHPDQIKAVLLESAAFPIA* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01048 540 MobiDBLite consensus disorder prediction 414 437 - -
Pte17g01048 540 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 222 536 - -
Pte17g01048 540 Pfam Helix-loop-helix DNA-binding domain 357 400 IPR011598 GO:0046983
Pte17g01048 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 413 IPR036638 GO:0046983
Pte17g01048 540 MobiDBLite consensus disorder prediction 279 299 - -
Pte17g01048 540 MobiDBLite consensus disorder prediction 321 362 - -
Pte17g01048 540 Coils Coil 389 409 - -
Pte17g01048 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Pte17g01048 540 SMART finulus 356 405 IPR011598 GO:0046983
Pte17g01048 540 MobiDBLite consensus disorder prediction 324 344 - -
Pte17g01048 540 CDD bHLH_AtAMS_like 353 414 - -
Pte17g01048 540 Gene3D - 341 414 IPR036638 GO:0046983
Pte17g01048 540 MobiDBLite consensus disorder prediction 70 105 - -
Pte17g01048 540 CDD ACT_UUR-ACR-like 470 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01048 Pte-Chr17 25576603 25579623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01048 41 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 38.683 1.62e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g01048 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01048 - - tcc:18605190 512.301