Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01044 ATGCATTTTGTAAAACTCGATGATTCGCCGATGTTCCGTCAACAGCTACAATGCTTAGAAGAAAATTCTGAATCATTGAGGGCCAGATGTTTGAAATTTTACAAAGGATGTCGGAAGTACACAGAAGGGCTTGGAGAGGGATACGATGGGGACATTGCATTTGCAAGCTCGCTGGAAGTGTTTGGAGGAGGACATAATGATCCACTATTTGCTGCTTTGGGAGGACCTGTTATGTCAAAATTCACTATTGCGTTGAGAGAAATTGGGAATTACAAGGAACTTCTTCGATCAGAGATTGAGCACATGCTGAGTGATAGGTTGCTATACTTCCTCAATGTTGACATCCAGGATATTAAGGAAGCTCGAAAGCGTTTTGATAAAACTTCACAAGTATACGATCAGGCCCGTGATAAGTTTCTTTCATTGAAGAAGAGCACTAAGATTGATGTTGCTGCTGCAATAGAGGAGGAATTGTACAATGCAAGATATGCATTTGAAGATGCTCGCTTCAATCTGGTCAGTGCCCTTTCAAATGTTGAGGCCAAAAAGAAATTTGAGTTTTTGGAGGCTGTTAGTGGGATTATGGATGCTCATCTAAGATACTTCCAACAGGGATATGAACTACTACATCAAATGGAGCCTTTCATTCAAGAGGTTTTGACTTATGCCCAATATTCAAGAGAAAGTTCCAATAATGATCAGATTTTTCTTGTTGAAAAAATGCAAGAGTACAAAGAACAAATAGATCGAGAAAGTAGGCAGTCTCTAAGTGTGGGTCCTGCAAATGGAGATTGTGCGCAACCTTTTGCTAGGAGGTCAAATAAAGTAATAGAAGCAGTCAATGAGTCAGCTAGAAATGGGAAGGTTGAAATCATTCGGCAAGGATATCTTTCAAAACGATCATCTAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGCCGCGGAACACTCTACTACTACCGCAAACCTTGGAACTGGTCATCTAGTGGCACCCAACAAGCTGGTCAAAGGAATAGCACGGCTGAAAATGGTTCTGGGTTACTAAGCAGGTTGCTTTCTTCTCATTACCATGGTGGTATCCATGATGAAAAATCTGTAGCACAGCACACTGTGAATCTGCTCACATCAACAATTAAGCCTGATGCAGATCAGTCGGATTTAAGATTTTGCTTTAGGATTATTTCGCCATCAAAGATTTATACTTTGCAGGCAGAAAATGCACTGGACCAGATGGATTGGATTGAGAAAATAACAGGAGTAATTGCTTCATTGTTGAGCTGCCAAACAGCAGAAAGGCCTCTCCCAACTAATCTGGAAATTGGTGATTGTTGCCCTCCTGAAGAGCTAGCAGAGAATTCTGCTGGTATTCATGAAAAAACGACAGATAATACAACCAAGAACTCTACCTCCAGTAACCAATTACGTGCATTTAGAAGTATGCCTTGGGTTAAATATGGTAAAACTACTGAGAAGCCAATTGATATACTAAGACAAGTTTTGGGAAATGACAAATGTGCTGATTGTGGTGCACCCGAGCCAGACTGGGCTTCATTAAACTTGGGAATATTGTTATGCATTGAATGTTCCGGAATTCATCGGAACCTTGGTGTTCATATATCGAAGGTAAGATCACTGACACTGGACGTGAAAGTTTGGGATCCTTATGTCTTAACTATGTTTCAGTCACTGGGAAATATTTATGCAAATTCAATTTGGGAGGAGTTGTTGCAATCAGAAACTAATTTTCAAAGTAATCAAATGCCTACTGGTCCCTCCAAGTCTGAAAGAGACAAGAGCTATCTACCGAGGAAACCCAGTCATAATGATCCCATCTCAGCAAAAGAAAAGTTTGTACATGCAAAGTATTCAGAAAAACTGTTTGTTCGCCAAATAAAGGAAAAGAAGGATCTACTTCCAATAGCAAGTCAGGTTTGGGAAGGTGTCCGTGCCAATAATAAGAAAGCAGTTTACCATCTCATTGTTAGCTCAGCCGTAGACATAAATGCTATCAGTGGGCAAGCATCATGTGACTCTGTGGATGAGGTTTCCTCAAGTAATTCAAATTCGTCATGTATAAGTGAAGATTTGCACACAGAAGAGACGTCCGTTTTCTGTAGTGTACTTCATTTAGCATGCCTAACTGCCGATATTGGCATGGCAGAGCTACTCTTACAGTATGGTGCAGAAATAAACGCATCTGATTCCAGAGGTCGGACACCATTGCATTATTGTATAACCAGAGGGAAGAACACAATCGCGAAGATGCTTCTTTTGAGGGGGGCTAATCCTCACGTTGTTGATGGTGAAGGTAATACTCCTCTGAAGCTTATGTCAGAATCGGGTTTTATAAACGGTGAAGCTCTCTCTTCCATAAACGGACCTGATCAAATGAGCTCGGAATAA 2415 0.4079 MHFVKLDDSPMFRQQLQCLEENSESLRARCLKFYKGCRKYTEGLGEGYDGDIAFASSLEVFGGGHNDPLFAALGGPVMSKFTIALREIGNYKELLRSEIEHMLSDRLLYFLNVDIQDIKEARKRFDKTSQVYDQARDKFLSLKKSTKIDVAAAIEEELYNARYAFEDARFNLVSALSNVEAKKKFEFLEAVSGIMDAHLRYFQQGYELLHQMEPFIQEVLTYAQYSRESSNNDQIFLVEKMQEYKEQIDRESRQSLSVGPANGDCAQPFARRSNKVIEAVNESARNGKVEIIRQGYLSKRSSNLRGDWKRRYFVLDSRGTLYYYRKPWNWSSSGTQQAGQRNSTAENGSGLLSRLLSSHYHGGIHDEKSVAQHTVNLLTSTIKPDADQSDLRFCFRIISPSKIYTLQAENALDQMDWIEKITGVIASLLSCQTAERPLPTNLEIGDCCPPEELAENSAGIHEKTTDNTTKNSTSSNQLRAFRSMPWVKYGKTTEKPIDILRQVLGNDKCADCGAPEPDWASLNLGILLCIECSGIHRNLGVHISKVRSLTLDVKVWDPYVLTMFQSLGNIYANSIWEELLQSETNFQSNQMPTGPSKSERDKSYLPRKPSHNDPISAKEKFVHAKYSEKLFVRQIKEKKDLLPIASQVWEGVRANNKKAVYHLIVSSAVDINAISGQASCDSVDEVSSSNSNSSCISEDLHTEETSVFCSVLHLACLTADIGMAELLLQYGAEINASDSRGRTPLHYCITRGKNTIAKMLLLRGANPHVVDGEGNTPLKLMSESGFINGEALSSINGPDQMSSE* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01044 804 PRINTS HIV Rev interacting protein signature 548 569 IPR001164 GO:0005096
Pte17g01044 804 PRINTS HIV Rev interacting protein signature 506 525 IPR001164 GO:0005096
Pte17g01044 804 PRINTS HIV Rev interacting protein signature 525 542 IPR001164 GO:0005096
Pte17g01044 804 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Pte17g01044 804 MobiDBLite consensus disorder prediction 600 614 - -
Pte17g01044 804 CDD PH_ACAP 293 430 - -
Pte17g01044 804 PANTHER CENTAURIN/ARF 5 791 IPR045258 GO:0005096
Pte17g01044 804 Pfam Putative GTPase activating protein for Arf 497 633 IPR001164 GO:0005096
Pte17g01044 804 CDD BAR_SFC_plant 15 215 IPR035670 -
Pte17g01044 804 Gene3D - 640 788 IPR036770 -
Pte17g01044 804 SUPERFAMILY BAR/IMD domain-like 6 313 IPR027267 -
Pte17g01044 804 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Pte17g01044 804 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 476 640 - -
Pte17g01044 804 Gene3D Arf GTPase activating protein 474 639 IPR038508 -
Pte17g01044 804 SMART PH_update 291 428 IPR001849 -
Pte17g01044 804 Pfam PH domain 292 425 IPR001849 -
Pte17g01044 804 SMART arf_gap_3 494 641 IPR001164 GO:0005096
Pte17g01044 804 CDD ArfGap 497 626 - -
Pte17g01044 804 SUPERFAMILY ArfGap/RecO-like zinc finger 493 633 IPR037278 -
Pte17g01044 804 Pfam Ankyrin repeats (many copies) 710 761 IPR002110 GO:0005515
Pte17g01044 804 SUPERFAMILY Ankyrin repeat 668 787 IPR036770 -
Pte17g01044 804 Gene3D Arfaptin homology (AH) domain/BAR domain 5 253 IPR027267 -
Pte17g01044 804 Gene3D - 282 436 IPR011993 -
Pte17g01044 804 ProSiteProfiles PH domain profile. 290 426 IPR001849 -
Pte17g01044 804 ProSiteProfiles Ankyrin repeat profile. 710 739 IPR002110 GO:0005515
Pte17g01044 804 MobiDBLite consensus disorder prediction 587 614 - -
Pte17g01044 804 Pfam BAR domain of APPL family 6 229 IPR004148 GO:0005515|GO:0005737
Pte17g01044 804 SMART ANK_2a 707 736 IPR002110 GO:0005515
Pte17g01044 804 SMART ANK_2a 740 769 IPR002110 GO:0005515
Pte17g01044 804 ProSiteProfiles Ankyrin repeat region circular profile. 710 738 - -
Pte17g01044 804 ProSiteProfiles Ankyrin repeat region circular profile. 740 771 - -
Pte17g01044 804 ProSiteProfiles ARF GTPase-activating proteins domain profile. 494 641 IPR001164 GO:0005096
Pte17g01044 804 Coils Coil 118 138 - -
Pte17g01044 804 SUPERFAMILY PH domain-like 290 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01044 Pte-Chr17 25531130 25539140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01044 488 633 C2H2 Transcription Factor Family AT4G21160 38.776 3.53e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01044 K12489 - qsa:O6P43_023509 1120.15