Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01041 ATGCCATTTGAGATAATGGATCAAAGAGGCATTCCTGCCTCTTCTCATATCTATGATGACATATTCCGTTCAGAGAGTAATGGATTGTGGCAGCCAAAGAACACACATGATAATCCAGGCACTGCTGGAATCAATGAAATGGGAGCATCACCTGGAGGCATTTTGGGTACTTCCTCACATGGTGAGCAGATAGACTTGCAATTGAGACAGATTAATCCACCAAGGGAGCTTGCTGAAAAGCAACTTCTTAGCAGAGAAGAAGGCTTTGCCGATACAGTCAACCTTCCCAATAAATCATTCACCCAGCATCTGAAACAACCGTCAAACATAATGATACATCCAATTTCTGTACCTTATAGCTTAGGAGGAACAAAGATTGTTACAGATGCAGGCTCTCATGAAAGCGGCTTATTTTCAAGCTCATTATCTGAGATATTTACCTGTAAAATGAGGTTGTCAGGAAATGATGTTCTATCTCATCAGGCAGCTTGTAAAATGGTTTCTAATGATGGTGAAGAGTCATATGGGTGTCACAAGAAAGTTGAACCTGGACACATTGGGAATATCCTTCCCGATGAAGATGATTTGTTTTCTGGTGTTATTGATGATCTAGGATTCAATGCAGATGCCAACACTAATACTGACTTTGAAGATTTTGACCTGTTTAGCAGTGGTGGTGGTTTGGAGTTGGAAGAGGATAATCTTTTTGCTTCAGAGAAAAGAAACAACAAATTTGGTGGCATTAACTGTCTGGGTGGTATTAGCGGAAAACAACAATTAGGAAAATATCCTTCTAGAACTCTTCTGGTGAGAAATATTAGTAACAATATTGAAGACTCGGAACTCACAGCTTTATTCAAGCAATTTGGAGATATAAGAACTCTTTATACAGCCTGCAAGCATCGTGGCTTTGTCATAATTTCCTATTATGACCTACGAGCTGCCCAAAATGCCATGCTAGCACTTCAAAACAAACCACTGCATCATAGGAATCTTGACATACACTTCTCTGTACCGAAGGACAATTCTCCAGAAAAGGATATTAACCATGGCATTCTCATGCTTTCCGACCTTGATCCATCTGTTTCAAATGATAAGCTCCAACATATTTTTGGCTTTTATGGAGAAATCAAAGATATATGTGAGATTCCAGAAAATCATCAAGTAAAATTAATAGAATTTTATGATGTCCGAGCTGCTGATTCTGCTCTACGAGAATTAAATGGGAGTCAAATTGCTGGGAAGCAGATTAAGCTCGAACCAGGCTGTCCTGGGGGTGCAATATGTCTGATGCAACAATCTCAGAAGGGACGGGATGGACATAATATTCAGAACAACTTTCCCTCGTCACATCATGCAATGTCTTCTAGACAAAATACTCTTACGTATATGGAAATGGGATCCAGCCCAGGATTGTATCCTTCAATCCAACAGACTATGAATGCATTCACTGTGAATTCACTTCCTAATGGAAACAGGAACTCTAGCTTGGCAAATGCTTTGCCCACTCCAGTGGGAAGTCCATCAACTGGAAAACTATTTGGTGTAAGTGAGACTAATTGTTTTTCGGGAACGAAAGCCACATCTGGTCCAAGATTCCATCCTCATTCCTTTCCCGAGTTCTGTGATACTTTGGTTAATGATGCTTCCTACAATTCGAGTATTATGGATATAGGTGGTAATATTAGTTCTGGACTAGCAGAAGGTATTGATGGTAGGTGCATTCAGGATTTAAGCTCATCTGCTAACCTGATGGATTTTAGTGGAGGTTTTGAATCTTCCGGAAATGGAAACTACACACCTCATGGACTTCATCACATATGGACCAAATCCAATATGCATCAGCAACATCCCTCAAGTCACATGGTGTGGCAGAATTCACCCCCATTTGTAAATGGAAGCTGTGCTCCCCGCCTTCTGAAAATGTCTGGATTTCCTAGAGTGCCACATCATATGCTGAGAACACCAAATGTTGATCACCATGTTGGATCAGCACCAGTTGTCAATGGCTCCCCCTGGGACATGCGGCACTCCAATTTAAGAGAGTCACCGGACACTTCTAGTTTTCACTTAGGTTCTCTTGGGAGTGCAGGTTTCCCTGGAAATTGGCAATTGTATCCTGCAGAAGTATCTGCTCAAAACATGTATCCTCATGTTGCTGGAAATCCTGTGGACATGATAGCGAATGCCGGGCAGCACTCTTCTAAACAAGTTTCCTGTCTTTTCCCTGTGAGGAACCCTGCCATGTCCATATCTAGACATGATGCTGCAAATGAACGTTCTAGAAACCAGTATCACCGCAGAAGCGATTCTAATTCAGCTAACGCTGATAAGAAACAATTTGAACTGGATATTGACCGCATATTGCGAGGCGAAGACAACAGAACAACACTCATGATAAAGAATATTCCCAACAAGTACACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGCCGTGGAACTTATGACTTTATATATTTACCCATTGACTTCAAGAACAAATGCAATGTTGGCTATGCATTCATCAATATGATTGATCCAAGTCAGATAGTTCCATTTTATCAGGCATTTAATGGGAAGAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCATCTCTAGCATACGCAAGGATTCAGGGTAAAGCTGCACTTATTGCTCATTTTCAGAATTCTAGTCTGATGAACGAAGATAAGCGTTGCCGGCCTATTCTCTTCCATACAGATGGTCCAAATGCTGGGGATCCTGAGCCCTTCCCTATGGGAACAAACAGCAGAGCCAGACCTGGAAAGTTTCGTTCTTGCAGCAATGAGGAATATCGTCACCAAGGGAATCCTTCAGCACCAGCAAGTGGAGATGAATCAACAAATGGCGCAGATTCTTCCCTGGCTTCAGCAAAGATCTCTAACTGA 2916 0.415 MPFEIMDQRGIPASSHIYDDIFRSESNGLWQPKNTHDNPGTAGINEMGASPGGILGTSSHGEQIDLQLRQINPPRELAEKQLLSREEGFADTVNLPNKSFTQHLKQPSNIMIHPISVPYSLGGTKIVTDAGSHESGLFSSSLSEIFTCKMRLSGNDVLSHQAACKMVSNDGEESYGCHKKVEPGHIGNILPDEDDLFSGVIDDLGFNADANTNTDFEDFDLFSSGGGLELEEDNLFASEKRNNKFGGINCLGGISGKQQLGKYPSRTLLVRNISNNIEDSELTALFKQFGDIRTLYTACKHRGFVIISYYDLRAAQNAMLALQNKPLHHRNLDIHFSVPKDNSPEKDINHGILMLSDLDPSVSNDKLQHIFGFYGEIKDICEIPENHQVKLIEFYDVRAADSALRELNGSQIAGKQIKLEPGCPGGAICLMQQSQKGRDGHNIQNNFPSSHHAMSSRQNTLTYMEMGSSPGLYPSIQQTMNAFTVNSLPNGNRNSSLANALPTPVGSPSTGKLFGVSETNCFSGTKATSGPRFHPHSFPEFCDTLVNDASYNSSIMDIGGNISSGLAEGIDGRCIQDLSSSANLMDFSGGFESSGNGNYTPHGLHHIWTKSNMHQQHPSSHMVWQNSPPFVNGSCAPRLLKMSGFPRVPHHMLRTPNVDHHVGSAPVVNGSPWDMRHSNLRESPDTSSFHLGSLGSAGFPGNWQLYPAEVSAQNMYPHVAGNPVDMIANAGQHSSKQVSCLFPVRNPAMSISRHDAANERSRNQYHRRSDSNSANADKKQFELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFIYLPIDFKNKCNVGYAFINMIDPSQIVPFYQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNSRARPGKFRSCSNEEYRHQGNPSAPASGDESTNGADSSLASAKISN* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01041 971 FunFam Protein MEI2-like 1 350 444 - -
Pte17g01041 971 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
Pte17g01041 971 SMART rrm1_1 267 335 IPR000504 GO:0003723
Pte17g01041 971 SMART rrm1_1 797 873 IPR000504 GO:0003723
Pte17g01041 971 SMART rrm1_1 352 420 IPR000504 GO:0003723
Pte17g01041 971 Pfam RNA recognition motif 2 795 891 IPR007201 -
Pte17g01041 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 418 IPR000504 GO:0003723
Pte17g01041 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 332 IPR000504 GO:0003723
Pte17g01041 971 Gene3D - 255 349 IPR012677 -
Pte17g01041 971 MobiDBLite consensus disorder prediction 753 776 - -
Pte17g01041 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 339 IPR000504 GO:0003723
Pte17g01041 971 MobiDBLite consensus disorder prediction 940 971 - -
Pte17g01041 971 SUPERFAMILY RNA-binding domain, RBD 264 422 IPR035979 GO:0003676
Pte17g01041 971 MobiDBLite consensus disorder prediction 755 776 - -
Pte17g01041 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 132 957 - -
Pte17g01041 971 CDD RRM3_MEI2_like 798 883 IPR034454 -
Pte17g01041 971 Gene3D - 746 883 IPR012677 -
Pte17g01041 971 Gene3D - 350 460 IPR012677 -
Pte17g01041 971 MobiDBLite consensus disorder prediction 906 971 - -
Pte17g01041 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 424 IPR000504 GO:0003723
Pte17g01041 971 CDD RRM1_MEI2_like 265 341 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01041 Pte-Chr17 25504712 25512688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01041 261 417 Eukaryotic Initiation Factors Gene Family AT3G16380 25.556 1.12e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01041 - - qsa:O6P43_030654 1077.77