LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte17g01016	ATGGAGTCTAGAATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCTTTTGGAGCAGCTATTCTTGTCCTTCACAAGTTTGAGAGGAAAAAATATGTCTTGAAGAAAATCAGGCTTGCAAGGCAGACTGAACGATGCCGGAGATCTGCGCATCAGGAGATGACTCTTATTGCCCGCATTCAACATCCTTACATTGTTGAATTTAAGGAAGCTTGGGTGGAAAAGGGCTGCTATGTCTGCATTGTCACTGGATTCTGCGAAGGAGGGGACTTGGCCGAGTTGATGAAAAAACAAACTGGAGCTTACTTTCCAGAGGAGAAGCTTTGCAAGTGGTTCACCCAACTACTATTGGCAGTTGAATATCTGCATTCAAATTTTGTCTTACACCGAGACGTGAAGTGCTCCAATATTTTTCTTACTAAGGATCATGATGTTCGCCTTGGTGATTTTGGGCTTGCTAAAACACTGAAAGCAGATGATTTGGCTTCTTCGGTTGTGGGAACACCAAATTATATGTGTCCTGAGCTGCTTGCGGATATTCCTTATGGATTCAAATCTGATATTTGGTCTCTTGGTACACTCACCTATAGAGTTAATTATTATATGCACAAACATGCTTTAACTGTGGCTTACATGCTCTTTTGTTGTCCAGGGTGCTGCATATATGAGATGGCTGCTTATCGTCCAGCTTTTAAAGCTTTTGATATGGCGGGACTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTACCATCCTGCTACTCACCCTCATTGAAAACACTCATCAAGGGTATGCTGAGAAAAAGTCCTGAGCATCGGCCAACGGCATCTGAGATCTTAAAACATCCGTATCTGCAACCTTATGTTGATCAATATCGTCCATCTTTCTGTCCTCCAACAACTGTTTCTCCTGAGAAGCCTCTTTCTGCTGCTCAAGATTCTAGAAGAAGTATGGCTGAAAGCCAAAATAGTAACAGCTCTTGTAGTGATAAAGATAGCTTGCTTTCAAGCGAGAAGAACGTTTCAGCATCAGGTTCAAACAGTGACAATAAAGTCACCGAGATTGATATAATATCTCACGATGATGAAGAATGTTCGGAGCATCTTCTTCCTGATGAAGAAGAAAACATGTTGGATATTTGTGCAGTCAAAATGAAGAGGTACAAATCAACGAAGTCTCACCGCGGAGAGAAACCTGATAATGAATCTAGGCCACCGAAAACAATTAAACATATCATGATGACACAGAAAGAAGGTAAAATTAGGGAGAATAGCTCCCCTGTGAAAATCAATCGCATGAAGGTTGGTGTTTCGTCAATGCAAAGAGCAAACGCCGAGGCACAGGTTAAATTGCCAAAACCTAATACTTCAAATCCTAGTGTTAAGCCTGTTATCGAGTCACCAACTGCTCCCCCAACAAAGGCAATCCCTGACTCTTCAAAACGAGTTCAAGGATCTCGTTCTATACTACATAAGTTACCGTTGGTAGAATCTACACCAAAAACTAAAGCAAGACATGACGTGACTCCTCTAACTGGACCAATGAAGCAGGGTACTGAAGATGGGATCCATGCTAAGCCTAGGCTAAGGACCCCTCCTGCACTGGTTAGACGCCCTTCATTTCCACCCAGGATAAAGCAGGGCGGCTCTGATGCGTCAAATGGAATGAGTGACGCTGTGAAGCAAGGTAGTACCGAAGAATTACTCCAAGAGCACCAGAATAAGACTATTAATGAATTGCCAAATGGTCACCTGACTCCTGCTTCTAGGGTGGTTCCCCATATACCCGAGAAGAAATTTGAAAGAGCTTCCAAAGGAATGCCGACAGATAGCAGTAACTCTGTCTCATCATCAGTGTCTGTTCAAGGATTTGATGTCTCCAACGATGCGAATACTTCTTCTATGCATTTTGAAGAACATATGTTTCGCAGTCAAGAAAATGGGTCTATCGTTGAAAATTTTGAACCTTGCCCCCATATTAGCTCTCTCGGTAACCCTACTAATTCTGAAATGGCTGAAAATGTGTTTGGGGAATCCTCTCAACTCATTGAGGGTCGTCAGAATATGTGTATTAATGATGAAAAAGTGAGTTCAAGTTCAGATATGGATCTCCATCTCCCAAATGCTAAGGAAACGGTACTTTATAATCATCATACTCCCTCAGATTGGACCAATTATTCTACCAACCATGGGAACGATCATAGGTCTCTAAGTTCTTCAAGTGAAACCTCTGCGGTCATTGAAGATCAGAATGCTCTCATCGATGACAAGACACTGACCTTGTCTAGAGCTATTCCATGTTCTGGAGGAAATTTGGTCCATGAACAAGTTTCTCTTTTCACCAAAACCAATAACAAACCTGATATAGCGATGAACCCAAACATAACTCGTGTTGCAGGTGGTAATGACAAGTTTACTGTGGCTGAAAGTCCCGCAGGCATTACTTCATCTAATTTACCAACCCAGGTAAATACTCTTACAGAAAGAGAACTTGTTTCACAAAGTCCAGCAAGTGAAAGGCAGATAGCTGGACATTTTCCTCCAGCCTTTGACGATGTCATTCATGTTATAAGGCACAGTAGTTTCCGTGTTGGGGGTGAACAGCCTGTTTTAGATTCAGCTGAGATGGGAGTTCACAATGTGGATGTCGGGAAACTGATAAATGTTGTGAGTAATGAACTAGACATGAGAAACGTGACCTCTCCTGTGAGTCATAACACCTCAAGTTGCTCAGCAAGTTTGAGCATGAAGTCAAATGTTTCTGATCACTCAGACGTTAAGGAATTCGATGATAGAAACTCTACACCGTCTGCTTCCCAACCTTCACCTGAGCTGAGCAAGACCGATTCTGCTTTGACTGAAGAATCACCTGCAAAAGAAAGTTTGGACGTTAAATCATTTAGGCAGAGAGCGGAGGCGCTAGAAGGGCTTTTAGAACTCTCAGCAGATTTGCTTCAGAACAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCTTTTGGAAAAGACAAGGTATCCCCAAGAGAAACAGCAATTTGGTTAGCCAAGAGTCTCAAAGGAATGATAATGGAAGACAGTGGACGCATTTCTTGA	3102	0.4246	MESRMDQYEIMEQIGRGAFGAAILVLHKFERKKYVLKKIRLARQTERCRRSAHQEMTLIARIQHPYIVEFKEAWVEKGCYVCIVTGFCEGGDLAELMKKQTGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDVKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGTLTYRVNYYMHKHALTVAYMLFCCPGCCIYEMAAYRPAFKAFDMAGLISKINRSSIGPLPSCYSPSLKTLIKGMLRKSPEHRPTASEILKHPYLQPYVDQYRPSFCPPTTVSPEKPLSAAQDSRRSMAESQNSNSSCSDKDSLLSSEKNVSASGSNSDNKVTEIDIISHDDEECSEHLLPDEEENMLDICAVKMKRYKSTKSHRGEKPDNESRPPKTIKHIMMTQKEGKIRENSSPVKINRMKVGVSSMQRANAEAQVKLPKPNTSNPSVKPVIESPTAPPTKAIPDSSKRVQGSRSILHKLPLVESTPKTKARHDVTPLTGPMKQGTEDGIHAKPRLRTPPALVRRPSFPPRIKQGGSDASNGMSDAVKQGSTEELLQEHQNKTINELPNGHLTPASRVVPHIPEKKFERASKGMPTDSSNSVSSSVSVQGFDVSNDANTSSMHFEEHMFRSQENGSIVENFEPCPHISSLGNPTNSEMAENVFGESSQLIEGRQNMCINDEKVSSSSDMDLHLPNAKETVLYNHHTPSDWTNYSTNHGNDHRSLSSSSETSAVIEDQNALIDDKTLTLSRAIPCSGGNLVHEQVSLFTKTNNKPDIAMNPNITRVAGGNDKFTVAESPAGITSSNLPTQVNTLTERELVSQSPASERQIAGHFPPAFDDVIHVIRHSSFRVGGEQPVLDSAEMGVHNVDVGKLINVVSNELDMRNVTSPVSHNTSSCSASLSMKSNVSDHSDVKEFDDRNSTPSASQPSPELSKTDSALTEESPAKESLDVKSFRQRAEALEGLLELSADLLQNNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGMIMEDSGRIS*	1034

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte17g01016	1033	MobiDBLite	consensus disorder prediction	902	923	-	-
	Pte17g01016	1033	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Pte17g01016	1033	MobiDBLite	consensus disorder prediction	902	966	-	-
	Pte17g01016	1033	MobiDBLite	consensus disorder prediction	502	566	-	-
	Pte17g01016	1033	SUPERFAMILY	Protein kinase-like (PK-like)	4	311	IPR011009	-
	Pte17g01016	1033	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Pte17g01016	1033	MobiDBLite	consensus disorder prediction	936	955	-	-
	Pte17g01016	1033	CDD	STKc_Nek	7	288	-	-
	Pte17g01016	1033	Gene3D	Transferase(Phosphotransferase) domain 1	90	364	-	-
	Pte17g01016	1033	MobiDBLite	consensus disorder prediction	303	352	-	-
	Pte17g01016	1033	ProSiteProfiles	Protein kinase domain profile.	8	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte17g01016	1033	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	5	982	-	-
	Pte17g01016	1033	FunFam	Serine/threonine-protein kinase Nek2	5	87	-	-
	Pte17g01016	1033	MobiDBLite	consensus disorder prediction	308	352	-	-
	Pte17g01016	1033	Gene3D	Phosphorylase Kinase; domain 1	1	87	-	-
	Pte17g01016	1033	MobiDBLite	consensus disorder prediction	454	489	-	-
	Pte17g01016	1033	SMART	serkin_6	8	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte17g01016	1033	Pfam	Protein kinase domain	8	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte17g01016	Pte-Chr17	25233679	25239231	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte17g01016	12	299	MAP Kinase Kinase Kinase	AT3G06030	29.276	5.04e-31	128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Pte17g01016		Pkinase	8.8e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte17g01016	K08857		-	zju:107410239	1047.34