Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g01008 ATGGGTGCTATACATAGGGAGGCTCAGATTTCATTTGCTGCATCGTCTATATTTCCTGGCTTCAAGTTTTCTCCCACAGACGAGGAATTGATTGCCTACTACTTGAGGAAAAAGTTGGATGGTCAAGAAGAAAGCGTTCAAGTGATTTCCCTGCTCGAGATTTGGAGATTCGAGCCTTGGGATTTGCCAGCCAAATCAGTAATACAGTCCGAAAATGAGTGGTTTTTCTTCTCGCCTCGTGGAAGGAAATACCCAAATGGCTCGCAAAGCAAAAGGGCAACTGATTCTGGCTATTGGAAAGCCACTGGGAAAGAACGAAATGTAAAGGCAGGTGCACAAGTGATCGGTACAAAGCGGACTCTAGTTTTCCACTTGGGTCGTGCACCAAAGGGGGAAAGAACGGAGTGGATCATGCATGAATATTGCACCATTGATAAAGACCAGGATTCCTTGGTCGTCTGTCGTCTCAGGAGGAACACTGAATTTCGATCAAATGATGCATCAAATCGAGGTACTTCTAGTCAAAGGAACGCAGTTACTTCACACGATGGGAGTGTTGTGTCCGATGGAGCCCTTGATCAGAGAAGTGACTGTAAGCGGGAAAAAGAAGCTGAAAGCAGCAGTAATGATTCTCATTCTATGGAGCAAATTGATTCTGCATCTGAGACAAACCAGAAACTTAAAACAGATGAAGAGGATTATTTTGCTGATATACTGAGGGATGAAATTGTGAAGCTGGATGAATCAGGAACTAGCATTCCCCACTCGATGCCAATGCGTGCATTTCCAGAGTTGGTAAAAAATGAAGTTGAATCTTCAACCTGTTTAATGCTATTACACAAGTTGGAACAGCAAGCTTTGGAAGATTCTGCACAATTAACCACGAGTCAGTCACCTTCGGTCCAAGGTACAGCTCAACGAAGGATCAGATTGAGGAAGTTCAAACCATGGGGACGTCAAGAAGGACAGAAAAAGTTACTTGAAACATCCAATAACGAGTACTCTCCAAGTCCAGAACAGCCGTCAAAGACAAGTTTCTCTGTCAGAACGGCGATGTATTGTGTCTTATTATTTGTTTCTGCTTTTCTCGTTTTGGTGTCTCTGTTTTTCCCTTTATGGGGAAGATCAGAAGGACTAAGCTTAGCCGTAAGTTTGTTCAATATAAATCGTTGTCCTTGTGATAAACCGTAG 1191 0.4316 MGAIHREAQISFAASSIFPGFKFSPTDEELIAYYLRKKLDGQEESVQVISLLEIWRFEPWDLPAKSVIQSENEWFFFSPRGRKYPNGSQSKRATDSGYWKATGKERNVKAGAQVIGTKRTLVFHLGRAPKGERTEWIMHEYCTIDKDQDSLVVCRLRRNTEFRSNDASNRGTSSQRNAVTSHDGSVVSDGALDQRSDCKREKEAESSSNDSHSMEQIDSASETNQKLKTDEEDYFADILRDEIVKLDESGTSIPHSMPMRAFPELVKNEVESSTCLMLLHKLEQQALEDSAQLTTSQSPSVQGTAQRRIRLRKFKPWGRQEGQKKLLETSNNEYSPSPEQPSKTSFSVRTAMYCVLLFVSAFLVLVSLFFPLWGRSEGLSLAVSLFNINRCPCDKP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g01008 396 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Pte17g01008 396 MobiDBLite consensus disorder prediction 163 228 - -
Pte17g01008 396 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Pte17g01008 396 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Pte17g01008 396 MobiDBLite consensus disorder prediction 165 184 - -
Pte17g01008 396 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 237 - -
Pte17g01008 396 MobiDBLite consensus disorder prediction 193 209 - -
Pte17g01008 396 Gene3D NAC domain 26 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g01008 Pte-Chr17 25198524 25201320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g01008 4 248 NAC Transcription Factor Family AT2G27300 55.870 6.65e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte17g01008 NAM 4.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g01008 - - cam:101495489 372.474