Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00995 ATGCCGCGTGGAAAGGAAAATGTATTGGTTGCTAAGCCAGCTGAACCTCAGAGGGATATCGAGTCCAATGAAAAGGTTGATCTTGATGAAGAAAATGACCCTGAGGAAGAAATGGAAGAAGAAATTGAATATGAAGAAGTAGAGGAAGAAGAAGAGGTAGAAGAAATAGAGGAGGAGGTCGAAGAGGAGGTGGAGGAGGAGGAAGAGGTGGAAGAAGTGGAGGACGAAGATACCGATAATGGTAATGCTAGTTCCAAAGCAAACACCAAAGATGATGATGAGAGGAAAAAATGTGACGAACTCCTTTCTCTACCTCCCCATGGGTCTGAGGTATACATTGGTGGAATTCCTCATAATGTTCCACCAGAGGATTTAAAAACTTTTTGTGAATCTATTGGAGAAGTCACTGAGGTTAGAGTGATGAAAGGAAAAGATTCAAGTGAGAATAAGGGCTTTGCTTTTGTGACTTTTCAAAGTGTAGAATTGGCTTCTAAAGCCATTGATGAGCTGAATAATACTGAATTCAAGGGTAAAAAGATAAAATGTTCGACATCTCAAGCAAAGAACCGCTTGTTCATTGGCAATATACCAAGAAGTTGGAAAGAGGAAGATCTGAGGAAGGTTGTGACTGAGGTTGGGCCAGGAGTTACTGCTGTGGAACTAGTGAAGGATGTGAAAACCACAAATAATAACCGGGGCTTTGCTTTTATTGACTACTATAATCACCAATGTGCCGAATACTCGAGGCAAAAGATGATTAAACCAAAATTTAAGCTTGGCAACAATGGTCCAACAGTGAGCTGGGCAGACCCTAAAAATGCTGATTCAGCTGCCTCTTCACAGGTTAAGGCTGTATACGTGAAGAACTTGCCTAAGAATGTGACACAAGACCAGTTGAAAAACCTGTTTGAACACCATGGGAAGATCACCAAAGTGGTTTTGCCTCCAGCAAAGTCTGGGCACGAGAAAAACAGGATTGGTTTTGTACATTTTGCAGAAAGGTCAAATGCCATGAAAGCACTGAAAAACACTGAACATTATGAGTTAGATGGCCAAGTTTTGGAGTGCTCTCTAGCAAAACCGCAGGCCGACCAAAAGTCTGGAGCTTCAAATTCACTGAAGCCAGGATTGCTTCCAAGTTACCCACCACATGTTGGGTATGGTTTGGTTGGCAATGGTTATGGTGCAATTGGTGCTGGATATGGTGCTGCTAGCTTTGCGCAGCCAATGATTTATGGACAGGGTCCTTCTCCTTCTGGAATGGCTATGATGCCTATGCTTCTGCCTGACGGACGAATTGGATATGTCCTGCAACAGCCAGGATTGCACCCACATGTTCCACCTTCACAACCAAGAGGTGGCACTGGGAGCGGTAGCAAGAATATCGGAAGTTCGAGCAGAAGGCATAACAATGAAGGTGGCCAAGGGCGCAGATATCGACCATATTAA 1449 0.4362 MPRGKENVLVAKPAEPQRDIESNEKVDLDEENDPEEEMEEEIEYEEVEEEEEVEEIEEEVEEEVEEEEEVEEVEDEDTDNGNASSKANTKDDDERKKCDELLSLPPHGSEVYIGGIPHNVPPEDLKTFCESIGEVTEVRVMKGKDSSENKGFAFVTFQSVELASKAIDELNNTEFKGKKIKCSTSQAKNRLFIGNIPRSWKEEDLRKVVTEVGPGVTAVELVKDVKTTNNNRGFAFIDYYNHQCAEYSRQKMIKPKFKLGNNGPTVSWADPKNADSAASSQVKAVYVKNLPKNVTQDQLKNLFEHHGKITKVVLPPAKSGHEKNRIGFVHFAERSNAMKALKNTEHYELDGQVLECSLAKPQADQKSGASNSLKPGLLPSYPPHVGYGLVGNGYGAIGAGYGAASFAQPMIYGQGPSPSGMAMMPMLLPDGRIGYVLQQPGLHPHVPPSQPRGGTGSGSKNIGSSSRRHNNEGGQGRRYRPY* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00995 482 CDD RRM_SF 111 183 - -
Pte17g00995 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Pte17g00995 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Pte17g00995 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 252 IPR000504 GO:0003723
Pte17g00995 482 SUPERFAMILY RNA-binding domain, RBD 106 274 IPR035979 GO:0003676
Pte17g00995 482 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Pte17g00995 482 Gene3D - 190 269 IPR012677 -
Pte17g00995 482 MobiDBLite consensus disorder prediction 1 96 - -
Pte17g00995 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Pte17g00995 482 SMART rrm2_1 110 183 IPR003954 GO:0003676
Pte17g00995 482 SMART rrm2_1 284 357 IPR003954 GO:0003676
Pte17g00995 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Pte17g00995 482 Gene3D - 270 376 IPR012677 -
Pte17g00995 482 SMART rrm1_1 284 357 IPR000504 GO:0003723
Pte17g00995 482 SMART rrm1_1 110 183 IPR000504 GO:0003723
Pte17g00995 482 SMART rrm1_1 190 267 IPR000504 GO:0003723
Pte17g00995 482 MobiDBLite consensus disorder prediction 452 470 - -
Pte17g00995 482 Coils Coil 35 77 - -
Pte17g00995 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Pte17g00995 482 MobiDBLite consensus disorder prediction 437 482 - -
Pte17g00995 482 SUPERFAMILY RNA-binding domain, RBD 276 379 IPR035979 GO:0003676
Pte17g00995 482 Gene3D - 19 189 IPR012677 -
Pte17g00995 482 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 21 461 - -
Pte17g00995 482 FunFam RNA recognition motif-containing protein 20 189 - -
Pte17g00995 482 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 272 380 - -
Pte17g00995 482 MobiDBLite consensus disorder prediction 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00995 Pte-Chr17 25074755 25079973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00995 111 444 Eukaryotic Initiation Factors Gene Family AT4G34110 22.933 1.12e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00995 K13161 - qsa:O6P43_000471 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00995 17 25074755 25079973 Pte17g00995 17 25074755 25079973 RCT