Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00977 ATGAAAGTTGTAGCTGCGTATTTGTTGGCCGTGTTAGGTGGCAATACTAGCCCATCTACTAATGATTTGAAGGATATCCTTGGATCCGTCAGAGCTGAGGCTGATGATGATAGAATTGAGTTGCTCTTGTCTCAAGTCAGTGGTAAAGATATCACTGAACTAATTGCTGCTGGGAGGGAGAAGTTGGCATCGGTGCCATCAGGTGGTGGTGCAGTTGCTGTTGCTGCTCCTGGTGGTGGCGCTGCTGCTGCTGCTGGACCAGCTGCTGAGCAACCAAAGGAAGAGAAGAAGGTGGAGGAGAAGGAGGAGTCTGATGATCCCACCATCTACGAAGCTTATTTGTGGTCAATTTACAAAAACTTCAAGCAAAAAGATAAGAAGTCAAACAAGGAGAAACCGGAAAACCACAAATACATAAACTAA 423 0.4586 MKVVAAYLLAVLGGNTSPSTNDLKDILGSVRAEADDDRIELLLSQVSGKDITELIAAGREKLASVPSGGGAVAVAAPGGGAAAAAGPAAEQPKEEKKVEEKEESDDPTIYEAYLWSIYKNFKQKDKKSNKEKPENHKYIN* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00977 140 Hamap 50S ribosomal protein L12 [rpl12]. 2 106 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pte17g00977 140 MobiDBLite consensus disorder prediction 78 106 - -
Pte17g00977 140 MobiDBLite consensus disorder prediction 90 106 - -
Pte17g00977 140 Gene3D - 1 59 IPR038716 -
Pte17g00977 140 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 110 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pte17g00977 140 Pfam 60s Acidic ribosomal protein 17 106 - -
Pte17g00977 140 FunFam 60S acidic ribosomal protein P2 1 59 - -
Pte17g00977 140 CDD Ribosomal_P2 1 67 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00977 Pte-Chr17 24924230 24925999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00977 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 74.286 5.42e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00977 K02943 - vvi:100254522 122.479