Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00976 ATGGAGGAAAGTCAGAATGGGGAGAAAGAAACCTCAGTGGTAGCTATTAAAACAGACGATGAACCTGTCGTTGGTCCTGGACCAGCACCTCAGCGTAAACCTAAACGACCTCTTCAGTTCGAACAGGCTTACCTCGATGTGCTTCCGTCTGCAAACATGTATGAGAAGAGCTACATGCATCGAGATGTGGTAACTCATGTTGCTGTTTCAGCTGCAGAGTTTTTCATTACCGGCAGTCTAGATGGGCATTTGAAGTTTTGGAAGAAAAAGCCCATTGGAATTGAGTTTGCTAAACACTTCAGATCCCACCTCGGTCCAATTGAAGGCTTAGCTGTTAGTATTGATGGCTTGCTATGCTGTACAATTTCAAATGACCAGTCTGTGAAGATATATGATGTAGTCAACTTTGATATGATGGTCATGATTCGTTTGCCATATATTCCTGCTACTGTTGAGTGGGTCTACAAACATGGGGATGTCAAACCTCGGCTTGCTATCAGTGATAGAAATTCCTCTTTTGTGCACATATATGATGCCCGAGCAGGTTCAAATGAACCTATACTCTCCAAAGAGATTCATTTGCTTCCAATAAAAGTTATGAGGTACAACCCAGCATTCGATACTGTGATCTCTGCAGATGCAAAGGGTATTATTGAATATTGGAGTCCTACAACACTTCAGTTTCCAGAAAATGAGGTTAATTTCAAACTGAAAAGTGACACCGACCTTTTTGAAATTGTCAAATGCAAGACTTCTGTTTCAACTATTGAGGTAAGTCCAGATGGCAAGCAATTTTCCATTACATCACCTGATCGAAGAATACGTGTATTTTGGTTTAGAACTGGTAAATTGAGGCGTGTTTATGATGAATCCCTTGAGGTGGCTCAAGATCTCCAAAGAAGTGATGCTCCAATGTACCGCCTGGAAGCCATTGATTTTGGCAGAAGGATGGCCATTGAGAAGGAAATTGAGAAAACAGAAGGCGCTCCACAGCCAAATGCAGTATTCGATGAAAGTGCAAACTTTCTCATATATGCAACCCTCCTTGGAATCAAGGTAGTGAATCTACAAACAAACAAAGTTTCTAGGATTCTTGGGAAAGTGGAGAGCAATGATAGGTTTTTGAGAATCGCCTTATATCAGGGTGATCGAAGCAGTAAAAAGGTTAGAAAGATTCCTTCAGCAGCTGCAAATGCGAACGAGAGCAAGGAACCACTGACAGATCCAACCCTTCTTTGTTGTGCCTTTAAAAAGCACCGAATTTATTTATTCAGTCGGAGAGAACCAGAGGAACCAGAGGATGCAACCAAGGGTAGAGATGTATTCAACGAGAAGCCTCCGGCGGATGAACTTTTGGCTGTATCAGATATTGGGAAGTCAGCCACAACATCGCTTCCTGAAAATGTGATCCTGCATACAACAATGGGTGACATTAATATGAGATTATATCCTGAGGAATGTCCAAAAACAGTGGAGAACTTCACTACTCACTGTCGGAATGGATATTATGATAACCTTATTTTTCATCGGGTTATCAAAGGATTCATGATTCAGACAGGAGATCCTTTGGGAGATGGCACTGGTGGACAATCTATCTGGGGAAGAGAGTTCGAGGATGAGTTTCATAAAAGTTTGAGACACGACAGACCTTTCACTGTATCAATGGCAAATGCGGGACCAAACACAAACGGCTCTCAGTTTTTCATCACTACTGTAGCTACTCCTTGGCTGGACAACAAGCACACTGTATTTGGCCGAGTTATAAAAGGAATGGACGTTGTACAGGCTATAGAAAAGGTGAAGACAGACAGGGCAGACAAGCCGTATCAAGATGTCAAAATTCTTAATGTAACCGTGCCGAAGTCTTGA 1869 0.4211 MEESQNGEKETSVVAIKTDDEPVVGPGPAPQRKPKRPLQFEQAYLDVLPSANMYEKSYMHRDVVTHVAVSAAEFFITGSLDGHLKFWKKKPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDQSVKIYDVVNFDMMVMIRLPYIPATVEWVYKHGDVKPRLAISDRNSSFVHIYDARAGSNEPILSKEIHLLPIKVMRYNPAFDTVISADAKGIIEYWSPTTLQFPENEVNFKLKSDTDLFEIVKCKTSVSTIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPMYRLEAIDFGRRMAIEKEIEKTEGAPQPNAVFDESANFLIYATLLGIKVVNLQTNKVSRILGKVESNDRFLRIALYQGDRSSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSATTSLPENVILHTTMGDINMRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDRADKPYQDVKILNVTVPKS* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00976 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 566 578 IPR002130 GO:0000413|GO:0003755
Pte17g00976 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 482 497 IPR002130 GO:0000413|GO:0003755
Pte17g00976 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 579 594 IPR002130 GO:0000413|GO:0003755
Pte17g00976 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 508 520 IPR002130 GO:0000413|GO:0003755
Pte17g00976 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 551 566 IPR002130 GO:0000413|GO:0003755
Pte17g00976 622 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 450 620 - -
Pte17g00976 622 Pfam WD domain, G-beta repeat 98 132 IPR001680 GO:0005515
Pte17g00976 622 SUPERFAMILY Cyclophilin-like 467 619 IPR029000 -
Pte17g00976 622 Gene3D - 47 444 IPR015943 GO:0005515
Pte17g00976 622 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 465 619 IPR002130 GO:0000413|GO:0003755
Pte17g00976 622 MobiDBLite consensus disorder prediction 1 36 - -
Pte17g00976 622 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 54 317 - -
Pte17g00976 622 SUPERFAMILY WD40 repeat-like 58 288 IPR036322 GO:0005515
Pte17g00976 622 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 503 520 IPR020892 GO:0003755|GO:0006457
Pte17g00976 622 SMART WD40_4 183 222 IPR001680 GO:0005515
Pte17g00976 622 SMART WD40_4 239 278 IPR001680 GO:0005515
Pte17g00976 622 SMART WD40_4 51 88 IPR001680 GO:0005515
Pte17g00976 622 SMART WD40_4 93 132 IPR001680 GO:0005515
Pte17g00976 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 464 618 IPR044666 -
Pte17g00976 622 Gene3D - 456 622 IPR029000 -
Pte17g00976 622 CDD cyclophilin_WD40 470 617 - -
Pte17g00976 622 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 469 619 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00976 Pte-Chr17 24917641 24922381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00976 469 619 U-box Gene Family AT5G67530 47.682 1.93e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00976 K12736 - gmx:100792207 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00976 17 24917641 24922381 Pte17g00976 17 24917641 24922381 RCT