Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00970 ATGATGGCTGAGAGTTCAACGCCGACCAACAGCTCGGGAGTTTCAAATCCTAACAATGGTTTGGATCGTGGAGATGGAAGAAAAGAAGATAAGCCGAAGGTGGTGGTGATAATGGGTCCAACTGGTTCCGGAAAGTCCAGGCTTGCCATTGATTTAGCCTCCCACTTCCCCATTGAGATAATCAATGCTGACTCCATGCAGGTCTACCAAGGCCTCGATGTTCTCACCAACAAAGTTCCACTCGCTGAACAAAAGGGAGTTCCTCATCATCTTTTAGGAAATATAAGACCAAACGTGGAATTCACGGCTAAAATGTTTCGGGATTCTGCTATACCTATCGTTGACCAAATACTGTCTCGAAACCATCTGCCTGTCATTGTAGGGGGTACCCATTACTATATCCAGGCACTTGTCAGTCCATTCCTTTTAGACGAGTCAGCTCAAGACATAAGTGAAAGCTTTTCAGACTCTTCTCCTGGAAGTGAGCAATGTGAAGCCAATTTTGACACTGAAAAGAGAAGTTCCAACTTTATTTATGATCAACTCAAAGACATTGATCCAGCCGCAGCAAATAGAGTGCACCCTAATAACTATAGAAGGATAAATCAGTACCTTACCTTGCATGCTCAAGCTGGCATTCTGCCGAGCAAACTCTTCACAGGGAAGGCTGCGGAGAATTGGGGTCAAGTCGAAAAGTTCAGATACAATTGCTGCTTTATCTGTGTGGATGCGTCATTGTCTGTACTGGATAGATATGTGGAACAGAGAGTAGATTGTATGATGGATGCTGGGTTACTAGATGAAGTCAATGATATATACACTCTGAATGCTGATTATACTCGAGGCCTGCGGCAGGCGATTGGTGTACGTGAATTTCAGTCTCTTCTTAGAACTGAAGTTGTTCTAGATATCTGTAGAAGAGAAACTAGATTAGAAGATGATTGCATTTCCCCGAGGTCAATAAGAACCGGCGATGGGAAACTGAAAGCAAAGTTAAGGGATCTCTTGAATTCCTCAAGTAATAATCAATCCAGCGTCCTTTTAGTGGAAGCTATTGAAAAGGTGAAGATAAATACCAGGAGACTTGTTCGGCGTCAGAAAAGGATGATCAATCGGTTGCAGACACTGTTTGAATGGAAGATATATCATGTTGATTCCACAGATTCAATATCAAGCCAATCAGACGATGTATGGGCTTCGCAAGTGGTAGATCCTGCCTCAAAGAAAATTAGATCTTTCCTTTCAGAACGTGAAAGCTCATTATTTAGTTCTGTGACCTCAAGCAGTGATGCAGGAATGAAGATAATTCAAAGAGATCTTTGGACTCAATACATTTGCAAGGCTTGTGGGGATAGAGTACTTCGAGGATCACATGAATGGGAACAACACAAACATGGTCGCGGACATCGCAAACGTGTATCTAGTCTCAAAAAGAAGCAGGGTTTCTCTTTAGCAAAAGTGAAAAACTAG 1470 0.4252 MMAESSTPTNSSGVSNPNNGLDRGDGRKEDKPKVVVIMGPTGSGKSRLAIDLASHFPIEIINADSMQVYQGLDVLTNKVPLAEQKGVPHHLLGNIRPNVEFTAKMFRDSAIPIVDQILSRNHLPVIVGGTHYYIQALVSPFLLDESAQDISESFSDSSPGSEQCEANFDTEKRSSNFIYDQLKDIDPAAANRVHPNNYRRINQYLTLHAQAGILPSKLFTGKAAENWGQVEKFRYNCCFICVDASLSVLDRYVEQRVDCMMDAGLLDEVNDIYTLNADYTRGLRQAIGVREFQSLLRTEVVLDICRRETRLEDDCISPRSIRTGDGKLKAKLRDLLNSSSNNQSSVLLVEAIEKVKINTRRLVRRQKRMINRLQTLFEWKIYHVDSTDSISSQSDDVWASQVVDPASKKIRSFLSERESSLFSSVTSSSDAGMKIIQRDLWTQYICKACGDRVLRGSHEWEQHKHGRGHRKRVSSLKKKQGFSLAKVKN* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00970 489 Hamap tRNA dimethylallyltransferase [miaA]. 34 415 IPR018022 GO:0008033
Pte17g00970 489 MobiDBLite consensus disorder prediction 460 489 - -
Pte17g00970 489 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 413 IPR039657 -
Pte17g00970 489 MobiDBLite consensus disorder prediction 1 33 - -
Pte17g00970 489 FunFam tRNA dimethylallyltransferase 439 482 - -
Pte17g00970 489 Gene3D Classic Zinc Finger 439 486 - -
Pte17g00970 489 Gene3D - 161 222 - -
Pte17g00970 489 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 34 304 IPR018022 GO:0008033
Pte17g00970 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 273 IPR027417 -
Pte17g00970 489 Pfam IPP transferase 67 370 - -
Pte17g00970 489 Gene3D - 32 438 IPR027417 -
Pte17g00970 489 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00970 Pte-Chr17 24854892 24860124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00970 16 488 C2H2 Transcription Factor Family AT2G27760 54.412 1.59e-174 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00970 K00791 - qsa:O6P43_000433 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00970 17 24854892 24860124 Pte17g00970 17 24854892 24860124 RCT