Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00958 ATGGAGTTTTGGGGTGTTGAGGTGAAATCAGGAGAGCCTCTAAAGGTACCTGTAGATGAAGAATTTGTTGTACATCTGTCACAGGCAGCTCTGGGTGAGTCAAAAAAAGATAAAGGAAGTGAACCAGTAGTTATTTTTGTGGAATTTGATTCAAAGAAGTATGTTTTGGGAACACTTTCAAGAGAGAGCATCCCACAAATTTCTCTGGATGTTGTGTTTGAGAAAGAATTTGCTCTCTCCCATAACTGGAAAAATGGAAATGAAGATTCATTGGATGAAGATCTCGCTGTACCACTGCAGCCTTCTATCAATGGTAAAGCTGATGTGAAGGATAAAGAAGCTAAGCCCGCAGCAAAGAGCAATGTTTCTCAGGTGGAAGTTCCTGGAAAAAAAGTTAAGATTGCTGATCAAAAGGAGGAGAAAGATGAAGACTCTGAAGATGATGATGATTTGAGTGAATTAGAATCTGATGGAGATGACTCTGGTGATTCTGATGAGGATATGGTCAAGGCTGAAGATGTAAGTGAAGATGATAGTGATGAAGAGGAAGAGGAGGAGCCCCAACCAAAGGGAAAGAAGAGAACCATTCCAGTCCAGCAAAAGACTCCAGTTCCTGCAAAAAAGTCTAAACAATCCACACCTCAAAACACTGATGCAAAAAAGGGTGCTCATACAGCAACCCCTCATCCATCAAAGAAGGCTGGTAAGGCTCCTGCTAGTGTTGACAAAACTCCAAAGTCGTCCGGAGGACAGTTTTCATGCAAATCCTGTAAAAAGGGATTTGGTTCTGAAAGTGGGCTGGAGCAGCATACAAAGGCTAAGCATAGTTCTTGA 834 0.4185 MEFWGVEVKSGEPLKVPVDEEFVVHLSQAALGESKKDKGSEPVVIFVEFDSKKYVLGTLSRESIPQISLDVVFEKEFALSHNWKNGNEDSLDEDLAVPLQPSINGKADVKDKEAKPAAKSNVSQVEVPGKKVKIADQKEEKDEDSEDDDDLSELESDGDDSGDSDEDMVKAEDVSEDDSDEEEEEEPQPKGKKRTIPVQQKTPVPAKKSKQSTPQNTDAKKGAHTATPHPSKKAGKAPASVDKTPKSSGGQFSCKSCKKGFGSESGLEQHTKAKHSS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00958 277 MobiDBLite consensus disorder prediction 202 222 - -
Pte17g00958 277 MobiDBLite consensus disorder prediction 141 185 - -
Pte17g00958 277 FunFam Histone deacetylase HDT1 1 88 - -
Pte17g00958 277 Pfam Nucleoplasmin-like domain 3 80 IPR041232 -
Pte17g00958 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 277 IPR013087 -
Pte17g00958 277 MobiDBLite consensus disorder prediction 84 277 - -
Pte17g00958 277 ProSitePatterns Zinc finger C2H2 type domain signature. 254 275 IPR013087 -
Pte17g00958 277 Gene3D Nucleoplasmin core domain 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00958 Pte-Chr17 24753045 24755895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00958 1 277 C2H2 Transcription Factor Family AT5G03740 38.889 5.76e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte17g00958 NPL 1.3e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00958 - - minc:123199064 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00958 17 24753045 24755895 Pte17g00958 17 24753045 24755895 RCT