Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00942 ATGAACCATGAGGTTCCTGGTCATGTAAAAGAAAAGAGGTACTTCTTCAGCATTAGAAAAGACAGCACTTTCTGTAAAGCTGGAAAGAGAGTTGCTGGATCTGGTTATTGGAAATCTACTGGCCAAGAGAAGCCAATCACAGTATCTGGGAGTAACAGGATAGTGGGAATGAGGAAAAGACTGATTTTTTATGAAGTAAAAGATTCTCACAATACCAAAACCAGATGGGTCATGCATGAGTTACGGCTTCTGGGTTCTGGAACAATTCCCAGATCATATCAGATGGAGAATCTACTCGAGAGGAGGATACCAGCCACATGTTCATCATCGATTTGA 336 0.4137 MNHEVPGHVKEKRYFFSIRKDSTFCKAGKRVAGSGYWKSTGQEKPITVSGSNRIVGMRKRLIFYEVKDSHNTKTRWVMHELRLLGSGTIPRSYQMENLLERRIPATCSSSI* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00942 111 ProSiteProfiles NAC domain profile. 1 101 IPR003441 GO:0003677|GO:0006355
Pte17g00942 111 PANTHER NAC TRANSCRIPTION FACTOR 56 11 85 - -
Pte17g00942 111 SUPERFAMILY NAC domain 12 96 IPR036093 GO:0003677|GO:0006355
Pte17g00942 111 Pfam No apical meristem (NAM) protein 10 83 IPR003441 GO:0003677|GO:0006355
Pte17g00942 111 Gene3D NAC domain 2 104 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00942 Pte-Chr17 24577596 24579415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00942 4 83 NAC Transcription Factor Family AT5G13180 43.902 7.36e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte17g00942 NAM 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00942 - - qsu:111996957 101.679