Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00937 ATGGTGTCCGACGCGAGTAAGAAGAAGGCCGCACAAAAGAAGGCCGCCGCCGCCGCCAAGCGAGGAGGCAAGGCTGCTGCTGCTACATCCAAAACTGCAGCGGTCGATGCTCAAAATGGAGCTGAGAAATTAACAAATGGGATCGATGCTCTTCAGATATCTGACCGGACTTGTACTGGCGTCCTCTGCTCTCACCCGCTTTCTAGGGATATCAGGATAGAATCGTTGTCGGTTACTTTTCATGGACATGATCTCATAGTTGACTCTGAATTGGAGCTAAATTATGGCAGACGGTACGGATTGCTTGGACTAAATGGATGTGGAAAATCTACTCTCCTCACAGCAATTGGTTGTCGAGAGCTCCCAATTCCAGATCACATGGATATTTACCACCTCACCAGAGAGATCGAAGCTTCTGATATGTCTTCCTTGGAGGCTGTCATAAACTGTGATGAGGAAAGGATAAAATTGGAGAAAGAAGTTGAAAACTTAGTAGCACAGGAAGATGGAGGTGGTGAAACTCTTGACCGTATTTATGAGCGTTTGGAAGCTATGGATGCATCAACTGCTGAGAAACGTGCCGCTGAGATTTTGCACGGTCTTGGTTTCAACAAGCAGATGCAGGAAAAGAAAACACGTGATTTTTCTGGTGGATGGAGAATGAGGATTGCATTAGCACGTGCTCTGTTTATAAACCCAACCATCCTTCTACTTGATGAACCTACTAATCACCTTGATTTGGAAGCATGTGTCTGGCTGGAGGAGACGTTGAAGAAATTTGAACGTATTCTTGTTGTGATTTCGCATTCCCAAGACTTTCTTAATGGTGTCTGCACAAACATTATTCACATGCAAAACAAACAACTAAAGATCTATACTGGCAACTATGATCAGTATGTTCAGACTCGTTCTGAACTTGAAGAAAACCAGATGAAGCAGTACAAGTGGGAGCAGGATCAGATTGCTTCGATGAAAGAATATATTGCCCGCTTTGGGCATGGATCTGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAAAAAACACTTGCAAAGATGGAGCGAGGGGGATTAACAGAGAAGGTGGCAAGAGATAAAGTTCTGGTCTTCCGCTTTGTTGATGTGGGGAAGCTTCCACCTCCTGTACTTCAGTTTGTGGAAGTATCATTTGGTTATACACCCGAAAATATACTTTATAAGAACCTTGACTTTGGCGTAGACTTGGACTCAAGGGTTGCTTTGGTTGGACCAAATGGAGCTGGGAAAAGTACACTGCTGAAGCTAATGACCGGGGATCTGATGCCTACAGAAGGAATGGTCCGGAGGCATAATCACCTCCGGATTGCACAATACCATCAGCACTTGGCTGAGAAGCTTGACTTGGAAATGTCTGCCCTGCATTATATGATGAAAGAATATCCAGGAACTGAGGAGGAGAAGATGAGAGCAGCCATTGGGAAATTTGGGCTTACGGGCAAGGCACAAGTGATGTCAATGAAAAATTTATCTGATGGGCAGAAGAGTAGGGTGATTTTCGCTTGGTTGGCATATCGGCAACCTAACATGCTACTTCTGGATGAGCCTACTAATCATTTGGATATCGAGACAATCGATTCACTTGCTGAGGCATTGAATGAATGGGATGGTGGGATGGTCCTTGTTAGCCACGATTTCAGACTGATAAATCAAGTTGCACATGAAATATGGGTCTGCGAAAATAAAACTGTGACAAGGTGGGAGGGTGATATTATGGCTTTCAAGAAGCACCTGAAGGCGAAGGCTGGCCTATCTGACTGA 1794 0.4482 MVSDASKKKAAQKKAAAAAKRGGKAAAATSKTAAVDAQNGAEKLTNGIDALQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSSLEAVINCDEERIKLEKEVENLVAQEDGGGETLDRIYERLEAMDASTAEKRAAEILHGLGFNKQMQEKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFERILVVISHSQDFLNGVCTNIIHMQNKQLKIYTGNYDQYVQTRSELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDKVLVFRFVDVGKLPPPVLQFVEVSFGYTPENILYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPTEGMVRRHNHLRIAQYHQHLAEKLDLEMSALHYMMKEYPGTEEEKMRAAIGKFGLTGKAQVMSMKNLSDGQKSRVIFAWLAYRQPNMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCENKTVTRWEGDIMAFKKHLKAKAGLSD* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00937 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 311 IPR003439 GO:0005524
Pte17g00937 597 ProSitePatterns ABC transporters family signature. 215 229 IPR017871 GO:0005524|GO:0016887
Pte17g00937 597 FunFam ATP-binding cassette sub-family F member 3 342 596 - -
Pte17g00937 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 576 IPR027417 -
Pte17g00937 597 Pfam ABC transporter 282 360 IPR032781 -
Pte17g00937 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 597 IPR003439 GO:0005524
Pte17g00937 597 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 42 592 - -
Pte17g00937 597 MobiDBLite consensus disorder prediction 1 27 - -
Pte17g00937 597 CDD ABCF_EF-3 71 288 - -
Pte17g00937 597 CDD ABCF_EF-3 382 574 - -
Pte17g00937 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 317 IPR027417 -
Pte17g00937 597 Pfam ABC transporter 89 243 IPR003439 GO:0005524
Pte17g00937 597 SMART AAA_5 407 574 IPR003593 GO:0016887
Pte17g00937 597 SMART AAA_5 95 297 IPR003593 GO:0016887
Pte17g00937 597 Gene3D - 71 335 IPR027417 -
Pte17g00937 597 Coils Coil 147 167 - -
Pte17g00937 597 Coils Coil 289 309 - -
Pte17g00937 597 FunFam Abc transporter f family member 1 71 335 - -
Pte17g00937 597 Gene3D - 346 595 IPR027417 -
Pte17g00937 597 Pfam ABC transporter 398 529 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00937 Pte-Chr17 24535418 24539791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00937 382 575 Calmodulin-binding Proteins AT2G36910 25.000 1.40e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00937 K06185 - pop:18098230 1032.71