Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00936 ATGGGGAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGGCCATGGTCACCTGAAGAAGACACCAAGTTAAAGCAGTACATAGATAAGCATGGAACTGGTGGGAACTGGATTGCTCTACCCCAGAAAGCTGGTCTCGAGAGATGTGGAAAAAGTTGCAGACTAAGATGGCTTAACTATCTCAGGCCAAACCTAAAGCATGGGGAATTTTCTGAGGAGGAAGACAGAATAATTTGTAGCTTATTCGCCAACATAGGCAGCAGGTGGTCAATAATAGCAGCCCAGTTGCCAGGTAGGACTGATAATGATATCAAGAACTACTGGAACACCAAGCTCAAGAAAAAACTCTTGCGGGTGTTTCCTCTTTCAGAAAAAAAGTCAACCGCATTTCACTCTACTCATCCCCACTCATCATATCCTTATCAATCTCTCTGCCCGACAATGTTCGAATACTGCAATTTCAATAACTACTACACCTCATCCACTGTATCTATCCCTAGGATCGAAGCCATTTCAGTCCCATCAAACTATTCAAACGCCACGGCTTGTTATTTGGCTACAAATCATACGCGTGAAGTGGTACAGAACCAAGATGTTGGCCTGTATAGTTCCATGCACGTTCAGTATCATCCTGCTGCAAAAGAGAGTTTTTTCATGTTTGGAAACGGAGGAAGCACTTTTAGTTCTTCCGATGGGAGCTGCAGTCAGTTCAGCTATGGTCGAGAGGTCAAGCAAGAAGATGAAATGGACCACCATCAGAACTTTCAAATAAGTGATGGAGTTGAAGAAAGCCATCATTGCATGTTTGGAAACGGAGGGAGCACTTTTAGTTCTTCTGATGGGAGCTACAGTCAGTTTTGCTATGGTCGAGAGGTCAAGCAAGAAGATGAAATGGGCCACCATCAGAACTTCAAAATACGTAATGGAGTTGAAGAAAGCCATAATTGCATGCTTAATTATGGGATTGGCAGCCTTGATGAGGGAGTAAGCCCTTTGGATTATTACGATGCTGAAGTTATTAAACAACTGATTACTGACACCAATACCAACAACAACAGTAGATTGAGCAGTATCTACTTGAGTTGA 1089 0.4307 MGRAPCCDKANVKKGPWSPEEDTKLKQYIDKHGTGGNWIALPQKAGLERCGKSCRLRWLNYLRPNLKHGEFSEEEDRIICSLFANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLRVFPLSEKKSTAFHSTHPHSSYPYQSLCPTMFEYCNFNNYYTSSTVSIPRIEAISVPSNYSNATACYLATNHTREVVQNQDVGLYSSMHVQYHPAAKESFFMFGNGGSTFSSSDGSCSQFSYGREVKQEDEMDHHQNFQISDGVEESHHCMFGNGGSTFSSSDGSYSQFCYGREVKQEDEMGHHQNFKIRNGVEESHNCMLNYGIGSLDEGVSPLDYYDAEVIKQLITDTNTNNNSRLSSIYLS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00936 362 Gene3D - 7 68 - -
Pte17g00936 362 SMART sant 13 64 IPR001005 -
Pte17g00936 362 SMART sant 67 115 IPR001005 -
Pte17g00936 362 FunFam Transcription factor RAX3 7 68 - -
Pte17g00936 362 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte17g00936 362 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte17g00936 362 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte17g00936 362 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte17g00936 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte17g00936 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pte17g00936 362 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte17g00936 362 CDD SANT 16 62 IPR001005 -
Pte17g00936 362 Gene3D - 69 138 - -
Pte17g00936 362 CDD SANT 70 113 IPR001005 -
Pte17g00936 362 PANTHER OS09G0431300 PROTEIN 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00936 Pte-Chr17 24522303 24524131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00936 1 118 MYB Transcription Factor Family AT5G57620 90.678 2.36e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g00936 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00936 K09422 - qsu:112023410 326.25