Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00930 ATGTGTGCCTTTACAGACTCGGTTCTGCTGAGCATTGACGAGTTTGAGCAACATGGTTTCATAGATGATGTTAACTTTGATCAATTCCTCGATTTAATTCGCGGGGAGAACGAAGATCCTGCCGGTAATTTCCAATGTAACTTCAGCAGTAGAGGCATGGTCGACCACCAATTAGTTTCCATGCCAGAGGTCCAAGTAGATGTGTTTGACTATGATGATGTGAATATCATCTGCGATCCCATTCCGCTGCTTAGCGCCTTTGATGAAGAAAACGATGGAGATGATTCTTCTGCGACCACCGGCGCCACCACCCCCACCACCCCGCCTGCCGTCCAAAATGGCATGAGGAGGCCAAAAGCTGATCGGTCTAAAACTCTGATTTCCGAGAGAAGGAGGAGAGGAAGATTGAAGGAGAAGCTGTATGCATTACGTACACTTGTTCCTACCATTACAAAGATGGATAAGGCCTCAATTGTTGGAGATGCTGCACTTTATGTGCAAGATCTACAGGCACAAGCTAAGAATCTGAAGAATGAAGTTGAACAACTTGAAGCTTCCCTTTATATGTCAGAGAAAGTTGAAGCGTCAAAATGCATTCCCAGGACAATTCAAGTTACCCGAAACAATCATCAACATTGCAAGAAGCTAATGTTGCAGATGGACGTGTTTCAAGTGGAGGAAAGAGGGTTTTATGTGAGAGTAGTTAGCAACAGAGGAGAAGGGGTGGCTGCATCACTCTATAAAGCTCTCGAGTCTCTAATGAGCTTCCAAGTCCAGAGCCCTAACTTGGCCTCTGTTCTTGAGAGATATGTACTCACGTTCACGTTGAATGTCATAGATTCAGACAAGGAGATAAACTTGCCAAACTTGAAGCTCTGGGTGACGGCTGCTTTTTTAAATCAAGGCTTTGAATTTATGGCATCATTTGGTTCTTAA 936 0.4434 MCAFTDSVLLSIDEFEQHGFIDDVNFDQFLDLIRGENEDPAGNFQCNFSSRGMVDHQLVSMPEVQVDVFDYDDVNIICDPIPLLSAFDEENDGDDSSATTGATTPTTPPAVQNGMRRPKADRSKTLISERRRRGRLKEKLYALRTLVPTITKMDKASIVGDAALYVQDLQAQAKNLKNEVEQLEASLYMSEKVEASKCIPRTIQVTRNNHQHCKKLMLQMDVFQVEERGFYVRVVSNRGEGVAASLYKALESLMSFQVQSPNLASVLERYVLTFTLNVIDSDKEINLPNLKLWVTAAFLNQGFEFMASFGS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00930 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 188 IPR036638 GO:0046983
Pte17g00930 311 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 68 301 - -
Pte17g00930 311 Gene3D - 112 186 IPR036638 GO:0046983
Pte17g00930 311 SMART finulus 126 175 IPR011598 GO:0046983
Pte17g00930 311 Pfam Helix-loop-helix DNA-binding domain 127 170 IPR011598 GO:0046983
Pte17g00930 311 Coils Coil 166 193 - -
Pte17g00930 311 MobiDBLite consensus disorder prediction 96 111 - -
Pte17g00930 311 MobiDBLite consensus disorder prediction 88 129 - -
Pte17g00930 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00930 Pte-Chr17 24495154 24496815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00930 7 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 47.205 7.83e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g00930 HLH 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00930 K26214 - qsu:112032263 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00930 17 24495154 24496815 Pte17g00930 17 24495154 24496815 RCT