Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00905 ATGTCTGAGGGTTCCTGGTTATTTGATGGGGTCTCCGATGAGTTCTTTGATGACTTTGTCACGTGTTTGGACTTCCCTTTTGAAGATTTAGAAAAGAATGGCGAAGAAGAAGACTGGAACACTCAATTTCAACGCCTTGATGAACCATGCTTTGACGCATTTGCTATTCCTGAACCTGGATTGTGTAGCAAAAACACAGATGATATTGCACTGGCATCGAAGAGAAGAACTCTCCCTGCTCCGTATAATAATATCTCCAAGCGGAAACAACTTCAAGAGGCAACTATAACCCATAGTGGCACAACTACTCTCCAACATAATGATGATACAAGTGATGTCAAAGATGTGCAAATGCTCCAAACCTACAGTCCAGTTTCTGTCTTTGAAAGCAGCAGCTCTTGCTCAGTTGAAAATTCCACCTTTGACTCAATTATCCCACAGCGAGCTAGAAGCAAACGCCAACGAATTTCAAATTGCAGTCAGATATTCTCAGTACCTTTCGTCTCTAGTTTACTATTTTCTGGAGACCCCCACAAAATCCCTGCCTCTGGATTAGCAGTAGAAACATACTCTGGTAAGTTAACCAATCCAGTCAAAAACAAGAGTAAAAAGGAGATGTCCTTACTATCAGGCTATATGGAGGTGAGAAAACATGTCGCTAATGATCTAGCTGTACCCAGAAAATGCATGCATTGTGAGGTTACAAAGACCCCACAGTGGAGGGAAGGGCCAATGGGTCCCAAGACACTATGTAATGCATGTGGGGTTCGTTACAGGTCAGGTCGTCTCTTTCCAGAATACAGGCCTTCTGCAAGTCCTACTTTCGTGGCATCTTTGCATTCAAATTGTCACAAGAAGGTTATAGAAATGAGAAGCCAAGCTAGCCGAAAAGATGGTACTGGTTCTTAA 909 0.4268 MSEGSWLFDGVSDEFFDDFVTCLDFPFEDLEKNGEEEDWNTQFQRLDEPCFDAFAIPEPGLCSKNTDDIALASKRRTLPAPYNNISKRKQLQEATITHSGTTTLQHNDDTSDVKDVQMLQTYSPVSVFESSSSCSVENSTFDSIIPQRARSKRQRISNCSQIFSVPFVSSLLFSGDPHKIPASGLAVETYSGKLTNPVKNKSKKEMSLLSGYMEVRKHVANDLAVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPSASPTFVASLHSNCHKKVIEMRSQASRKDGTGS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00905 302 PANTHER GATA TRANSCRIPTION FACTOR 25 295 - -
Pte17g00905 302 CDD ZnF_GATA 228 275 IPR000679 GO:0006355|GO:0043565
Pte17g00905 302 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 285 - -
Pte17g00905 302 SMART GATA_3 223 273 IPR000679 GO:0006355|GO:0043565
Pte17g00905 302 ProSitePatterns GATA-type zinc finger domain. 229 254 IPR000679 GO:0006355|GO:0043565
Pte17g00905 302 FunFam GATA transcription factor 219 300 - -
Pte17g00905 302 ProSiteProfiles GATA-type zinc finger domain profile. 227 259 IPR000679 GO:0006355|GO:0043565
Pte17g00905 302 Pfam GATA zinc finger 229 262 IPR000679 GO:0006355|GO:0043565
Pte17g00905 302 Gene3D - 221 300 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00905 Pte-Chr17 24185543 24189740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00905 8 298 C2C2-Gata Transcription Factor Family AT1G08010 37.037 1.52e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte17g00905 GATA 3.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00905 - - qsa:O6P43_000334 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00905 17 24185543 24189740 Pte17g00905 17 24185543 24189740 RCT
Pte17g00905 17 24185543 24189740 Pte15g01108 15 8305836 8308784 RCT